View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_high_23 (Length: 309)
Name: NF14579_high_23
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 1104245 - 1104535
Alignment:
| Q |
1 |
acttgagaagcgtcaacgcattacatggattccagaagataatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgt |
100 |
Q |
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| T |
1104245 |
acttgagaagcgtcaacgcattacatggattccagaagataatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgt |
1104344 |
T |
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| Q |
101 |
ggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattgga |
200 |
Q |
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| T |
1104345 |
ggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattgga |
1104444 |
T |
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| Q |
201 |
cacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctagtttgaaattgccagaaac |
291 |
Q |
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| T |
1104445 |
cacaaggatgtgtgcgaaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctagtttgaaattgccagaaac |
1104535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 1047232 - 1047505
Alignment:
| Q |
15 |
aacgcattacatggattccagaagataatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaa |
114 |
Q |
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| T |
1047232 |
aacgcattatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagatgattgtgatgtctataatcattgtggcccatatggaaa |
1047331 |
T |
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| Q |
115 |
atgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtg |
214 |
Q |
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| T |
1047332 |
ttgcatttataacccgtctccaatttgtcaatgtttagatgggtttgagcctaaatcaccacaaaattgggacgcatcaaattggacacaaggatgtgtg |
1047431 |
T |
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| Q |
215 |
cgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctagtttgaaattgccaga |
288 |
Q |
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| T |
1047432 |
cgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaattgccaga |
1047505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 64 - 288
Target Start/End: Original strand, 1072094 - 1072318
Alignment:
| Q |
64 |
agtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaa |
163 |
Q |
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| T |
1072094 |
agtaccaaaaaatgattgtgatgtctataatcgttgcggcccttatggaaattgcattcataacccgtctccaatttgccaatgtttagatgggtttgag |
1072193 |
T |
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| Q |
164 |
cctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaa |
263 |
Q |
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| T |
1072194 |
cctaaatcaccacaaaattggtacgcatcaaattggacacaaggatgtgtgcgcaaaggtgaagaaacatggaattgtggtgtgaatgatcgttttagaa |
1072293 |
T |
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| Q |
264 |
cattttctagtttgaaattgccaga |
288 |
Q |
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|||||||| | |||||||||||||| |
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| T |
1072294 |
cattttctggattgaaattgccaga |
1072318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 68 - 288
Target Start/End: Original strand, 1087759 - 1087979
Alignment:
| Q |
68 |
ccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaaccta |
167 |
Q |
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|||| |||||||||||||| |||||||| |||||| ||||||||||| || ||| ||| |||||||||||||| ||||||||||| |||||||| |||| |
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| T |
1087759 |
ccaaaagatgattgtgatgtctataatcgttgtggcccttatggaaattgcgttcataacgagtctccaatttgccaatgtttagatgggtttgagccta |
1087858 |
T |
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| Q |
168 |
aatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacatt |
267 |
Q |
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| T |
1087859 |
aatcgccaaaaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggtgacgaagattggagatgtggagtgaatgatagttttgtaagatt |
1087958 |
T |
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| Q |
268 |
ttctagtttgaaattgccaga |
288 |
Q |
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| T |
1087959 |
ttatggattgaaattgccaga |
1087979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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