View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14579_high_26 (Length: 289)
Name: NF14579_high_26
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 258
Target Start/End: Complemental strand, 9535104 - 9534873
Alignment:
| Q |
32 |
gttgttcattgtttttaatgattaaacgtgttaataaaagcaaaaagtcacaaaagatatttaatttatcaaaattacattaatactcacatctatgatt |
131 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9535104 |
gttgttaattgtttttaatgattaaacgtgttaaaaaaa-caaaaactcacaaaagatatttaatttatcaaaattacattaatacccacatctatgatt |
9535006 |
T |
|
| Q |
132 |
agttattaaaaagaacatattggtgttttggtcatatgcaagcaag---------nnnnnnnnnngacaagatatgcaagcaagtaatttgttaacttac |
222 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
9535005 |
agttattaaaaagaacattttggtgttttggtcatatgaaagcaagtttttttttttttttttttgacaagatatgcaagcaag---tttgttaacttac |
9534909 |
T |
|
| Q |
223 |
tttttaatgttttaagttggtgtaaattatcatata |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9534908 |
tttttaatgttttaagttggtgtaaattatcatata |
9534873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University