View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14579_high_29 (Length: 271)
Name: NF14579_high_29
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 3910791 - 3911033
Alignment:
| Q |
17 |
ccactttcatttgtcacattgatcaaagaagtagaatcctcaggaaggggaggatcagaagcaggtaaaattgtgtcattttcatcaatatcctcttttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3910791 |
ccactttcatttgtcacattgatcaaagaagtagaatcctcaggaaggggaggatcagaagcgggtaaaattgtgtcattttcatcaatatcctcttttt |
3910890 |
T |
|
| Q |
117 |
gtatgatcatttcagcattcctttcttttatctccacttcaaattttggttttgtctcatcagattcaataaagtctaggcctccacctttgagtaacat |
216 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3910891 |
ggatgatcatttcagcattcctttcttttatctccacttcaaattttggttttgtctcatcagattcaataaagtctaggcctccacctttgagtaacat |
3910990 |
T |
|
| Q |
217 |
aaaattcattagcacaattaatataagtctatttaggcctcca |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3910991 |
aaaattcattagcacaattaatataagtctatttaggcctcca |
3911033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University