View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14579_high_9 (Length: 414)

Name: NF14579_high_9
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14579_high_9
NF14579_high_9
[»] chr1 (5 HSPs)
chr1 (20-399)||(49547115-49547495)
chr1 (33-199)||(47872526-47872682)
chr1 (69-191)||(33857205-33857328)
chr1 (69-191)||(33923595-33923718)
chr1 (145-206)||(44261669-44261730)
[»] chr3 (3 HSPs)
chr3 (136-251)||(14961756-14961874)
chr3 (367-399)||(42668178-42668210)
chr3 (162-249)||(574404-574492)
[»] chr4 (2 HSPs)
chr4 (163-206)||(55771061-55771104)
chr4 (163-206)||(55835295-55835338)
[»] chr7 (1 HSPs)
chr7 (367-396)||(13858459-13858488)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 49547495 - 49547115
Alignment:
Q  20 ctactgtttgtggtaatttagagactaatttgatcaagctttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactga 119  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547495 ctactgtatgcggtaatttagagactaatttgatcaaactttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactga 49547396  T
Q  120 tgagtgatgatagaattttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatgcattatatctacttcgg 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547395 tgagtgatgatagaattttttcacgtaatgaactaatgtagtttatatctttggagtattaaaataggggttagaggttcatgcattatatctacttcgg 49547296  T
Q  220 aaactaatttccactggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacagcaactaagactctgagagtttcgaggg 319  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547295 gaactaatttccacgggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacagcaactaagactctgagagtttcgaggg 49547196  T
Q  320 gaggaagagtaggggggaaattggagaaatcttgcaca-nnnnnnnatagtgtttttgtagataatgataaatgaatgttt 399  Q
    |||| ||||||| |||||||||||||||||||| ||||        |||||||||||||||||||||||||||||||||||    
T  49547195 gagggagagtagaggggaaattggagaaatcttccacattttttttatagtgtttttgtagataatgataaatgaatgttt 49547115  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 47872526 - 47872682
Alignment:
Q  33 taatttagagactaatttgatcaagctttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactgatgagtgatgatag 132  Q
    ||||||||||||||||||||| ||  ||||  |||||   ||||||||||||||| | ||||||||| ||||| ||||||| |  |||||       |||    
T  47872526 taatttagagactaatttgatgaaattttgcacaatt---tgatggattaagttgtgacactctgcattgttgaagaactacatcgatga-------tag 47872615  T
Q  133 aattttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttc 199  Q
    || ||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  47872616 aaatttgtcatgtaatgaactgatggagtctatatctttggagtattaaaataggggttaggggttc 47872682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 191
Target Start/End: Original strand, 33857205 - 33857328
Alignment:
Q  69 taattgatggattaagttgggtcactctgcactgttggagaactaaa-ctgatgagtgatgatagaattttttcacg---taatgaactaatgtagtcta 164  Q
    ||||||||||||||||||| | ||| ||||| ||||| ||||  ||| || ||   ||||||||||||||||||||    ||||||||| ||| ||||||    
T  33857205 taattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaat---tgatgatagaattttttcacacgttaatgaactgatgaagtcta 33857301  T
Q  165 tatctttggagtattaaaataggggtt 191  Q
    |||||||||||||||||||||||||||    
T  33857302 tatctttggagtattaaaataggggtt 33857328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 191
Target Start/End: Complemental strand, 33923718 - 33923595
Alignment:
Q  69 taattgatggattaagttgggtcactctgcactgttggagaactaaa-ctgatgagtgatgatagaattttttcacg---taatgaactaatgtagtcta 164  Q
    ||||||||||||||||||| | ||| ||||| ||||| ||||  ||| || ||   ||||||||||||||||||||    ||||||||| ||| ||||||    
T  33923718 taattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaat---tgatgatagaattttttcacacgttaatgaactgatgaagtcta 33923622  T
Q  165 tatctttggagtattaaaataggggtt 191  Q
    |||||||||||||||||||||||||||    
T  33923621 tatctttggagtattaaaataggggtt 33923595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 44261730 - 44261669
Alignment:
Q  145 taatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatgcatt 206  Q
    ||||| ||| ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  44261730 taatggactgatggagtctttatctttggaggattaaaataggggttaggggttcatgcatt 44261669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 14961756 - 14961874
Alignment:
Q  136 tttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatg---cattatatctacttcggaaactaatttcca 232  Q
    ||||||| ||||| |||| ||| | |||| || ||||||| ||||||||| |||| || ||||||||   |||| ||| | ||| |||||||||| ||||    
T  14961756 tttttcatgtaataaactgatggaatctacatatttggagcattaaaatatgggtcaggggttcatgatgcattttatgtccttgggaaactaatgtcca 14961855  T
Q  233 ctggtaaaaactgtcttac 251  Q
    ||| ||| |||||||||||    
T  14961856 ctgataacaactgtcttac 14961874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 42668210 - 42668178
Alignment:
Q  367 agtgtttttgtagataatgataaatgaatgttt 399  Q
    |||||||||||||||||||||||||||||||||    
T  42668210 agtgtttttgtagataatgataaatgaatgttt 42668178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 574492 - 574404
Alignment:
Q  162 ctatatctttggagtattaaaa-taggggttagaggttcatgcattatatctacttcggaaactaatttccactggtaaaaactgtctt 249  Q
    |||||||||||||| ||||||| |||||||| |  || |||||||| ||| | | | |||||||||| | |||| ||||||||||||||    
T  574492 ctatatctttggagaattaaaagtaggggtttggagtgcatgcattttatgtccataggaaactaatgttcacttgtaaaaactgtctt 574404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 55771061 - 55771104
Alignment:
Q  163 tatatctttggagtattaaaataggggttagaggttcatgcatt 206  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  55771061 tatatctttggagtattaaaatagaggtttggggttcatgcatt 55771104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 55835295 - 55835338
Alignment:
Q  163 tatatctttggagtattaaaataggggttagaggttcatgcatt 206  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  55835295 tatatctttggagtattaaaatagaggtttggggttcatgcatt 55835338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 396
Target Start/End: Complemental strand, 13858488 - 13858459
Alignment:
Q  367 agtgtttttgtagataatgataaatgaatg 396  Q
    ||||||||||||||||||||||||||||||    
T  13858488 agtgtttttgtagataatgataaatgaatg 13858459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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