View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14579_low_1 (Length: 666)

Name: NF14579_low_1
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14579_low_1
NF14579_low_1
[»] chr8 (5 HSPs)
chr8 (333-648)||(38421350-38421665)
chr8 (1-291)||(38421702-38422003)
chr8 (592-639)||(38602430-38602476)
chr8 (603-645)||(11592240-11592282)
chr8 (596-640)||(35534538-35534581)
[»] chr5 (2 HSPs)
chr5 (592-622)||(14980628-14980658)
chr5 (592-624)||(14932413-14932445)
[»] chr4 (3 HSPs)
chr4 (599-629)||(1133040-1133070)
chr4 (592-630)||(27043751-27043789)
chr4 (592-640)||(15173224-15173271)
[»] chr7 (1 HSPs)
chr7 (599-640)||(19302491-19302531)
[»] chr6 (2 HSPs)
chr6 (599-640)||(33089607-33089648)
chr6 (592-640)||(21405075-21405122)
[»] chr3 (3 HSPs)
chr3 (592-625)||(26990146-26990179)
chr3 (592-640)||(25447166-25447213)
chr3 (592-636)||(26911696-26911740)
[»] chr1 (2 HSPs)
chr1 (592-625)||(6292608-6292641)
chr1 (600-640)||(33204323-33204362)
[»] chr2 (4 HSPs)
chr2 (592-640)||(10619141-10619188)
chr2 (592-640)||(15370244-15370292)
chr2 (592-640)||(18179051-18179098)
chr2 (592-640)||(30331853-30331900)


Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 333 - 648
Target Start/End: Complemental strand, 38421665 - 38421350
Alignment:
Q  333 ccttatgaatcatgctatttcaacacaatccatggtttgttaaagtatattactctgaaacttaccttagtaaagaactaaactttacgtgctacaaatt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38421665 ccttatgaatcatgctatttcaacacaatccatggtttgttaaagtatattactctgaaacttaccttagtaaagaactaaactttacgtgctccaaatt 38421566  T
Q  433 ttactgttttatatgcatacattatattattgccttctctttcttctccaccacaaacttataataaatttccatttcactatatgcatactactctcct 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| |||||||||    
T  38421565 ttactgttttatatgcatacattatattattgccttctctttcttttccaccacaaacttataataaattttcatttcactatacgcataatactctcct 38421466  T
Q  533 aaatagcactcttggattacatgaagctctgaatttggttattgggtttacgggtatgttttggaatgacttatttgagcttatctactgacacaagtgt 632  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38421465 aaatagcagtcttggattacatgaagctctgaatttggttattgggtttacgggtatgttttggaatgacttatttgagcttatctactgacacaagtgt 38421366  T
Q  633 ttgtgagagcttatag 648  Q
    |||||||||| |||||    
T  38421365 ttgtgagagcatatag 38421350  T

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Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 38422003 - 38421702
Alignment:
Q  1 cggttatgatatagtagttaattgagaggggagttaagatgcttagttagttaggttggattacttatagaaatgataaaacaatgctgcttataaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38422003 cggttatgatatagtagttaattgagaggggagttaagatgcttagttagttaggttggattacttatagaaatgataaaacaatgctgcttataaatta 38421904  T
Q  101 aaa-----------gatccttcaggtatatttgagcaaatctctttttcaatatattcattgaatagagatattttctatgtcaataaacatttttggct 189  Q
    |||           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38421903 aaaaaaaaaaaaaagatccttcaggtatatttgagcaaatctctttctcaatatattcattgaatagagatattttctatgtcaataaacatttttggct 38421804  T
Q  190 cttgaaaatcaaaagacatgttgcaagttctaaatcagttcttcatatgttctcagtttaactctcaaatctttgaggagaattctattgataagaagct 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38421803 cttgaaaatcaaaagacatgttgcaagttctaaatcagttcttcatatgttctcagtttaactctcaaatctttgaggagaattctattgataagaagct 38421704  T
Q  290 aa 291  Q
    ||    
T  38421703 aa 38421702  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 639
Target Start/End: Complemental strand, 38602476 - 38602430
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgacacaagtgtttgtgag 639  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||||||    
T  38602476 tttggattgacttatttgagcttatctactgacataagt-tttgtgag 38602430  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 645
Target Start/End: Original strand, 11592240 - 11592282
Alignment:
Q  603 ttatttgagcttatctactgacacaagtgtttgtgagagctta 645  Q
    ||||||||||||||||||| |||||| |||||| |||||||||    
T  11592240 ttatttgagcttatctactaacacaactgtttgagagagctta 11592282  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 596 - 640
Target Start/End: Original strand, 35534538 - 35534581
Alignment:
Q  596 gaatgacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||    
T  35534538 gaatgacttatttgagcttatctactaacataagt-tttgtgaga 35534581  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 622
Target Start/End: Complemental strand, 14980658 - 14980628
Alignment:
Q  592 tttggaatgacttatttgagcttatctactg 622  Q
    |||||||||||||||||||||||||||||||    
T  14980658 tttggaatgacttatttgagcttatctactg 14980628  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 624
Target Start/End: Complemental strand, 14932445 - 14932413
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgac 624  Q
    |||||| ||||||||||||||||||||||||||    
T  14932445 tttggattgacttatttgagcttatctactgac 14932413  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 629
Target Start/End: Complemental strand, 1133070 - 1133040
Alignment:
Q  599 tgacttatttgagcttatctactgacacaag 629  Q
    |||||||||||||||||||||||||||||||    
T  1133070 tgacttatttgagcttatctactgacacaag 1133040  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 630
Target Start/End: Original strand, 27043751 - 27043789
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgacacaagt 630  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  27043751 tttggattgacttatttgagcttatctactgacataagt 27043789  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 640
Target Start/End: Original strand, 15173224 - 15173271
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    |||||| |||||||||||| |||||||||||||| |||| |||||||||    
T  15173224 tttggattgacttatttgaacttatctactgacataagt-tttgtgaga 15173271  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Original strand, 19302491 - 19302531
Alignment:
Q  599 tgacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  19302491 tgacttatttgagcttatctactgacataagt-tttgtgaga 19302531  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Complemental strand, 33089648 - 33089607
Alignment:
Q  599 tgacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  33089648 tgacttatttgagcttatctactgacatatgtatttgtgaga 33089607  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 640
Target Start/End: Original strand, 21405075 - 21405122
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    |||||| |||||||||||||||||| |||||||| |||| |||||||||    
T  21405075 tttggattgacttatttgagcttatatactgacataagt-tttgtgaga 21405122  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 625
Target Start/End: Original strand, 26990146 - 26990179
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgaca 625  Q
    |||||| |||||||||||||||||||||||||||    
T  26990146 tttggattgacttatttgagcttatctactgaca 26990179  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 640
Target Start/End: Original strand, 25447166 - 25447213
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    |||||| ||||||||||||| ||||||||||||| |||| |||||||||    
T  25447166 tttggattgacttatttgagtttatctactgacataagt-tttgtgaga 25447213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 636
Target Start/End: Complemental strand, 26911740 - 26911696
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgacacaagtgtttgt 636  Q
    |||||| ||||||||||||| ||||||||||||| |||| |||||    
T  26911740 tttggattgacttatttgagtttatctactgacataagtttttgt 26911696  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 625
Target Start/End: Complemental strand, 6292641 - 6292608
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgaca 625  Q
    |||||| |||||||||||||||||||||||||||    
T  6292641 tttggattgacttatttgagcttatctactgaca 6292608  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 600 - 640
Target Start/End: Original strand, 33204323 - 33204362
Alignment:
Q  600 gacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  33204323 gacttatttgagcttatctactgacataagt-tttgtgaga 33204362  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 640
Target Start/End: Original strand, 10619141 - 10619188
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    |||||| ||||| ||||||| |||||||||||||||||| |||||||||    
T  10619141 tttggattgactcatttgagtttatctactgacacaagt-tttgtgaga 10619188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 640
Target Start/End: Original strand, 15370244 - 15370292
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    |||||| |||||||||||||||||||||||| || |||  |||||||||    
T  15370244 tttggattgacttatttgagcttatctactggcataagcatttgtgaga 15370292  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 640
Target Start/End: Complemental strand, 18179098 - 18179051
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    |||||| ||||||||||||||||||||||| ||| |||| |||||||||    
T  18179098 tttggattgacttatttgagcttatctactaacataagt-tttgtgaga 18179051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 640
Target Start/End: Complemental strand, 30331900 - 30331853
Alignment:
Q  592 tttggaatgacttatttgagcttatctactgacacaagtgtttgtgaga 640  Q
    |||||| |||||||||| |||||||||||||||| |||| |||||||||    
T  30331900 tttggattgacttatttcagcttatctactgacataagt-tttgtgaga 30331853  T

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