View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14579_low_13 (Length: 404)

Name: NF14579_low_13
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14579_low_13
NF14579_low_13
[»] chr4 (21 HSPs)
chr4 (138-389)||(25842328-25842590)
chr4 (13-71)||(25842657-25842715)
chr4 (138-213)||(21305890-21305965)
chr4 (253-340)||(25014022-25014109)
chr4 (253-335)||(8562520-8562602)
chr4 (253-334)||(23170132-23170213)
chr4 (253-322)||(26449190-26449258)
chr4 (138-223)||(40317142-40317226)
chr4 (18-71)||(40317346-40317399)
chr4 (138-223)||(40327216-40327300)
chr4 (18-71)||(40327420-40327473)
chr4 (253-340)||(41469647-41469734)
chr4 (253-340)||(40163308-40163394)
chr4 (253-340)||(40487074-40487161)
chr4 (265-340)||(56423427-56423502)
chr4 (253-332)||(26490608-26490687)
chr4 (267-340)||(6486768-6486841)
chr4 (166-223)||(12754888-12754945)
chr4 (166-219)||(22480209-22480262)
chr4 (138-223)||(24965953-24966038)
chr4 (138-223)||(29509524-29509609)
[»] chr7 (14 HSPs)
chr7 (138-223)||(1253992-1254077)
chr7 (138-223)||(6268981-6269065)
chr7 (253-322)||(14731740-14731809)
chr7 (253-322)||(1253871-1253940)
chr7 (19-71)||(6268821-6268873)
chr7 (13-71)||(1254193-1254251)
chr7 (138-213)||(43172629-43172704)
chr7 (253-295)||(21024624-21024666)
chr7 (138-223)||(16710075-16710160)
chr7 (138-223)||(17684311-17684396)
chr7 (253-293)||(6269118-6269158)
chr7 (138-222)||(21486690-21486774)
chr7 (138-222)||(23017537-23017621)
chr7 (253-281)||(23017674-23017702)
[»] chr5 (18 HSPs)
chr5 (138-223)||(31913922-31914007)
chr5 (138-212)||(16497404-16497479)
chr5 (252-340)||(21238214-21238302)
chr5 (253-340)||(33892273-33892360)
chr5 (161-213)||(31561466-31561518)
chr5 (253-335)||(2674525-2674607)
chr5 (138-223)||(29716365-29716450)
chr5 (152-213)||(36195871-36195932)
chr5 (165-223)||(4840968-4841027)
chr5 (253-340)||(31914059-31914146)
chr5 (253-335)||(34910171-34910253)
chr5 (146-223)||(36180058-36180136)
chr5 (253-295)||(25869347-25869389)
chr5 (138-220)||(40766846-40766928)
chr5 (166-213)||(16801156-16801203)
chr5 (18-68)||(5650480-5650529)
chr5 (146-224)||(35701785-35701863)
chr5 (138-219)||(3032656-3032737)
[»] chr6 (7 HSPs)
chr6 (141-223)||(21010395-21010477)
chr6 (18-71)||(21010588-21010641)
chr6 (253-335)||(24202794-24202876)
chr6 (253-340)||(16439382-16439469)
chr6 (253-295)||(31995720-31995762)
chr6 (138-223)||(31975216-31975301)
chr6 (284-340)||(7835004-7835060)
[»] chr2 (19 HSPs)
chr2 (138-213)||(28546234-28546309)
chr2 (253-340)||(41979396-41979483)
chr2 (138-213)||(37810382-37810457)
chr2 (23-71)||(32241936-32241984)
chr2 (254-337)||(2104323-2104406)
chr2 (155-226)||(24026342-24026413)
chr2 (253-340)||(38411944-38412030)
chr2 (18-68)||(2308423-2308473)
chr2 (138-211)||(2103819-2103892)
chr2 (138-223)||(18727080-18727165)
chr2 (23-71)||(32294233-32294281)
chr2 (253-295)||(13908640-13908682)
chr2 (138-223)||(9731497-9731582)
chr2 (138-223)||(30850910-30850995)
chr2 (166-223)||(37654859-37654916)
chr2 (253-322)||(45160638-45160706)
chr2 (148-223)||(31846629-31846704)
chr2 (18-71)||(24026168-24026221)
chr2 (184-220)||(43304741-43304777)
[»] chr8 (12 HSPs)
chr8 (138-219)||(4870632-4870713)
chr8 (140-211)||(35446919-35446990)
chr8 (253-322)||(4870507-4870576)
chr8 (138-213)||(33177361-33177433)
chr8 (16-71)||(33177543-33177598)
chr8 (252-287)||(12521783-12521818)
chr8 (138-223)||(3007282-3007367)
chr8 (253-290)||(6387274-6387311)
chr8 (138-223)||(12737546-12737630)
chr8 (253-281)||(27974348-27974376)
chr8 (253-281)||(28031617-28031645)
chr8 (253-293)||(33177259-33177299)
[»] chr3 (13 HSPs)
chr3 (138-213)||(9030578-9030653)
chr3 (253-340)||(27163039-27163126)
chr3 (253-340)||(53644762-53644848)
chr3 (138-200)||(30238073-30238135)
chr3 (138-223)||(27162870-27162954)
chr3 (255-342)||(45731311-45731398)
chr3 (138-224)||(21385949-21386035)
chr3 (253-335)||(37833379-37833460)
chr3 (18-73)||(29690945-29691000)
chr3 (138-223)||(7437020-7437105)
chr3 (166-223)||(33693850-33693907)
chr3 (253-290)||(49459058-49459095)
chr3 (255-340)||(53836609-53836694)
[»] chr1 (23 HSPs)
chr1 (253-316)||(34019662-34019725)
chr1 (138-207)||(46042423-46042492)
chr1 (138-223)||(48965978-48966063)
chr1 (253-340)||(34751002-34751089)
chr1 (252-334)||(42637492-42637574)
chr1 (138-224)||(35176736-35176822)
chr1 (18-68)||(42637821-42637871)
chr1 (138-223)||(2292735-2292820)
chr1 (255-340)||(8148014-8148099)
chr1 (255-340)||(11578465-11578550)
chr1 (138-223)||(32759542-32759627)
chr1 (138-178)||(226450-226490)
chr1 (138-213)||(3593790-3593865)
chr1 (285-340)||(33886303-33886358)
chr1 (285-340)||(33957894-33957949)
chr1 (138-213)||(42637634-42637709)
chr1 (18-68)||(5208961-5209010)
chr1 (253-295)||(50038021-50038063)
chr1 (255-340)||(1242648-1242733)
chr1 (253-306)||(33886350-33886403)
chr1 (253-306)||(33957849-33957902)
chr1 (165-224)||(5208775-5208835)
chr1 (253-293)||(28403319-28403359)
[»] scaffold0246 (1 HSPs)
scaffold0246 (253-340)||(25013-25100)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 138 - 389
Target Start/End: Complemental strand, 25842590 - 25842328
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactattagcaatattatttt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  25842590 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttatctttataattaagtgatattatgcactattagcaatattatttt 25842491  T
Q  238 agattacataagtcatttata-------------taattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaa 324  Q
     | ||||||||||||||||||             |||||||||||||||||||||||||| ||||||  ||||| | |||||||||||||||||  ||||    
T  25842490 ggcttacataagtcatttatataatagttttatataattttaattttaggtaaacttgcatgaatttgtgattcgagtttacatagataaaacggattaa 25842391  T
Q  325 tataaactctcaagttatttatatcgtaatcaagaatgtattttgtgttgggagtagttctttct 389  Q
     |||||||||| || |||||||||||||||  ||| ||||  |||||||||||||||||||||||    
T  25842390 gataaactctcgagatatttatatcgtaatttagagtgta--ttgtgttgggagtagttctttct 25842328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 25842715 - 25842657
Alignment:
Q  13 catcaatgataatgatgttatggaactttaaaagcattgatcttttgaagaaattaact 71  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25842715 catcgatgataatgatgttatggaactttaaaaacattgatcttttgaagaaattaact 25842657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 21305965 - 21305890
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    |||||||  ||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  21305965 tattttgacgctaagttgaacacaactctttattatggtgattatgtatactttgtctttataattatgtcatatt 21305890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 25014022 - 25014109
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||||||||||||||||| | |||| ||||| |||||| ||||||||| ||||||||||| |  ||||||||| ||||    
T  25014022 tttatataattttaattttaggtaaactcgtacgagtttacaattcaagtttacatagctaaaacgagttgaggtaaactctcgagtt 25014109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 8562602 - 8562520
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctc 335  Q
    |||||||||||||||||||||||||||| | |||| |||||||||| | ||||||||| ||||||||||| |  |||||||||    
T  8562602 tttatataattttaattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctc 8562520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 23170213 - 23170132
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactct 334  Q
    |||||||||||||||||||||||||||||| |||| ||| |||||| | ||||| ||  ||||||||||| | |||||||||    
T  23170213 tttatataattttaattttaggtaaacttgtacgagtttccgattcgagtttacttatgtaaaacgagttgagataaactct 23170132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 26449190 - 26449258
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagtt 322  Q
    |||||||||||| ||||||||||||||| | |||| |||||||||||| ||||||||| |||||||||||    
T  26449190 tttatataattt-aattttaggtaaactcgtacgagtttacgattcaagtttacatagctaaaacgagtt 26449258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 40317226 - 40317142
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| | ||||||||||| ||||| |||||||| |||||||||||| |||||  ||||||||||||| ||||| |||||||||    
T  40317226 tattttgattctaagttgaacataactatttattatagtggttatgtatgctttg-ttttataattaagttatattttgcactatt 40317142  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 40317399 - 40317346
Alignment:
Q  18 atgataatgatgttatggaactttaaaagcattgatcttttgaagaaattaact 71  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  40317399 atgataatgatgttgtggaactttagaaggattgatcttttgaagaaattaact 40317346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 40327300 - 40327216
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| | ||||||||||| ||||| |||||||| |||||||||||| |||||  ||||||||||||| ||||| |||||||||    
T  40327300 tattttgattctaagttgaacataactatttattatagtggttatgtatgctttg-ttttataattaagttatattttgcactatt 40327216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 40327473 - 40327420
Alignment:
Q  18 atgataatgatgttatggaactttaaaagcattgatcttttgaagaaattaact 71  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  40327473 atgataatgatgttgtggaactttagaaggattgatcttttgaagaaattaact 40327420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 41469734 - 41469647
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    ||||||||||||||||||||||||||||   |||| ||||||| || | ||||||||| ||||||||||| |  ||||||||| ||||    
T  41469734 tttatataattttaattttaggtaaactcatacgagtttacgagtcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 41469647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 40163308 - 40163394
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||| |||||||||||||||   |||| |||||||||| | ||||||||| ||||||||||| |  ||||||||| ||||    
T  40163308 tttatataattt-aattttaggtaaactcctacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 40163394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 40487161 - 40487074
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||| |||||||||| ||| |||||| | |||| |||||||||| | ||||||||| ||||||||||| |  ||||||||| ||||    
T  40487161 tttataaaattttaattatagataaactcgtacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 40487074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 56423502 - 56423427
Alignment:
Q  265 taattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||||| | |||| |||||||||| | ||||||||| ||||||||||| |  ||||||||| ||||    
T  56423502 taattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 56423427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 26490687 - 26490608
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaact 332  Q
    |||||||||||||||||||||||||||| | | || ||  ||| || | ||||| || |||||||||||| |||||||||    
T  26490687 tttatataattttaattttaggtaaactcgtatgagttctcgaatcgagtttacctaaataaaacgagttgatataaact 26490608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 6486841 - 6486768
Alignment:
Q  267 attttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||| | |||| |||| ||||| | ||||||||| ||||||||||| |  ||||||||| ||||    
T  6486841 attttaggtaaactcgtacgagtttatgattcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 6486768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 12754888 - 12754945
Alignment:
Q  166 tttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||||||| |||  ||||| |||||||||  |||||||||||||| |||||||||    
T  12754888 tttattatggtagtttggtataatttgcctttgaaattaagtcatattttgcactatt 12754945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 22480209 - 22480262
Alignment:
Q  166 tttattatggtggttatgtatactttgcctttataattaagtcatattatgcac 219  Q
    ||||||| ||| ||| | ||||||||| |||||||||||||||||||| |||||    
T  22480209 tttattacggtagttgtatatactttgtctttataattaagtcatattttgcac 22480262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 24966038 - 24965953
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| || |||||||| | ||||  ||||||||||| |||  ||||| |||| | || ||||||||||||||| |||||||||    
T  24966038 tattttgatgttaagttgagcataacgttttattatggtagtttggtataatttgtcgttgtaattaagtcatattttgcactatt 24965953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 29509609 - 29509524
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||| | |||   ||||||||||| |||  ||||| |||||| || ||||||||| ||||| |||||||||    
T  29509609 tattttgatgctaagttgagcataatgttttattatggtagtttggtataatttgcccttgtaattaagttatattttgcactatt 29509524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 1254077 - 1253992
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  1254077 tatttttgtgctaagttgaacataactctttaatatggtggttatgtatactttgtctttataattaagtcatattttgcactatt 1253992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 6268981 - 6269065
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||||  ||||| ||||||||| |||||| |||||| ||| |||||||||||||||||||| |||||||||    
T  6268981 tattttgatgctaagttgaaaataactatttattatgatggtta-gtatacattgtctttataattaagtcatattttgcactatt 6269065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 14731809 - 14731740
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagtt 322  Q
    |||||||||||||||||||||||||||| | |||| |||||||||| | ||||||||| |||||||||||    
T  14731809 tttatataattttaattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaacgagtt 14731740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 1253940 - 1253871
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagtt 322  Q
    |||||||||||||||||||||||||||| | |||| |||||||||| | |||||| || |||||||||||    
T  1253940 tttatataattttaattttaggtaaactcgtacgagtttacgattcgagtttacaaaggtaaaacgagtt 1253871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 6268821 - 6268873
Alignment:
Q  19 tgataatgatgttatggaactttaaaagcattgatcttttgaagaaattaact 71  Q
    |||||||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  6268821 tgataatgatgttatgaaactttaaaaggattgaacttttgaaaaaattaact 6268873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 1254251 - 1254193
Alignment:
Q  13 catcaatgataatgatgttatggaactttaaaagcattgatcttttgaagaaattaact 71  Q
    |||| ||||||||||||||||| ||||||| ||| ||||| |||||||||||| |||||    
T  1254251 catcgatgataatgatgttatgaaactttagaaggattgaacttttgaagaaactaact 1254193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 43172629 - 43172704
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    |||||||||| |||||||||| | ||  ||||||||||| |||  ||||| ||| ||||| |||||||||||||||    
T  43172629 tattttggtgttaagttgaacattacgttttattatggtagtttggtataattttcctttgtaattaagtcatatt 43172704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 21024624 - 21024666
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacga 295  Q
    |||||||||||||||||||||||||||| | |||| |||||||    
T  21024624 tttatataattttaattttaggtaaactcgtacgagtttacga 21024666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 16710075 - 16710160
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||| | ||||  ||||||||| | |||  ||||| |||||||||  |||||||||||| | |||||||||    
T  16710075 tattttgatgctaagttgagcataacattttattatgatagtttggtataatttgcctttgcaattaagtcataatttgcactatt 16710160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 17684311 - 17684396
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||| | ||||  ||||||||| | |||  ||||| |||||||||  |||||||||||| | |||||||||    
T  17684311 tattttgatgctaagttgagcataacattttattatgatagtttggtataatttgcctttgcaattaagtcataatttgcactatt 17684396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 6269118 - 6269158
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttac 293  Q
    |||||||||||||||||||||||||||| | |||| |||||    
T  6269118 tttatataattttaattttaggtaaactcgtacgagtttac 6269158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 21486690 - 21486774
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactat 222  Q
    ||||||| |||||||||||   ||||  ||||||||||| |||  |||||  ||| |||| ||||||||||||||| ||||||||    
T  21486690 tattttgatgctaagttgagtataacgttttattatggtagtttggtataacttgtctttgtaattaagtcatattttgcactat 21486774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 23017537 - 23017621
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactat 222  Q
    ||||||| ||||||||||| | ||||  ||||||||||| |||  ||||| | ||| ||| ||||||||||||||| | ||||||    
T  23017537 tattttgatgctaagttgagcataacgttttattatggtagtttggtataatctgcttttgtaattaagtcatattttacactat 23017621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 23017674 - 23017702
Alignment:
Q  253 tttatataattttaattttaggtaaactt 281  Q
    |||||||||||||||||||||||||||||    
T  23017674 tttatataattttaattttaggtaaactt 23017702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 31913922 - 31914007
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  31913922 tattttgatgctaagttaaacataactctttattatggtggttatgtatactttgtctttataattaagtcatattttgcactatt 31914007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 16497479 - 16497404
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtgg-ttatgtatactttgcctttataattaagtcatat 212  Q
    ||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  16497479 tattttgatgctaagttgaacataactctttattatgatggtttatgtatactttgtctttataattaagtcatat 16497404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 21238302 - 21238214
Alignment:
Q  252 atttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    ||||||| ||||||||||||||||||||| | |||| |||||||||||| ||||||||| ||||||||||| |  ||||||||| ||||    
T  21238302 atttatacaattttaattttaggtaaactcgtacgattttacgattcaagtttacatagttaaaacgagttgaggtaaactctcgagtt 21238214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 33892360 - 33892273
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||||||||||||||||| | |||| |||||||||| | ||||||||| ||||||||||| |  ||||||||| ||||    
T  33892360 tttatataattttaattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 33892273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 31561518 - 31561466
Alignment:
Q  161 aactctttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  31561518 aactctttattatggtagttatgtatactttgtctttataattaagtcatatt 31561466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 2674607 - 2674525
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctc 335  Q
    ||||||||||||||||||||| |||||| | |||| |||||||||| |||||| |||| ||||||||||| |  |||||||||    
T  2674607 tttatataattttaattttagataaactcgtacgagtttacgattcgaatttatatagctaaaacgagttgaggtaaactctc 2674525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 29716450 - 29716365
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||| | ||||  ||||||||||| |||  ||||| ||||||||| ||||||||||||||| |||||||||    
T  29716450 tattttgatgctaagttgagcataacattttattatggtagtttggtataatttgcctttgtaattaagtcatattttgcactatt 29716365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 36195932 - 36195871
Alignment:
Q  152 gttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    ||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||    
T  36195932 gttgaacataactctttattatggttgttatgtatactttgtctttacaattatgtcatatt 36195871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 4841027 - 4840968
Alignment:
Q  165 ctttattatggtggttatgtatactttgccttt-ataattaagtcatattatgcactatt 223  Q
    ||||||||| || |||||||||||||||||||| |||||||||||||||| |||||||||    
T  4841027 ctttattattgtagttatgtatactttgccttttataattaagtcatattttgcactatt 4840968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 31914059 - 31914146
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||||||||||||| ||| | |||| |||| ||||| | ||||||||| ||||||||||| |  ||||||||| ||||    
T  31914059 tttatataattttaattttaggtatactcgtacgagtttatgattcgagtttacataggtaaaacgagttgaggtaaactctcgagtt 31914146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 34910171 - 34910253
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctc 335  Q
    ||||||||||||||||||||| |||||| | |||| |||||||||| | ||||||||  ||||||||||| |  |||||||||    
T  34910171 tttatataattttaattttagataaactcgtacgagtttacgattcgagtttacataactaaaacgagttgaggtaaactctc 34910253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 36180058 - 36180136
Alignment:
Q  146 tgctaagttgaacttaactctttattatggtggttatgtatactttgccttt-ataattaagtcatattatgcactatt 223  Q
    ||||||||||| | |||| ||||||||| ||| | | ||||||||||||||| |||||||||||||||| |||||||||    
T  36180058 tgctaagttgagcataacgctttattatagtgatcaggtatactttgccttttataattaagtcatattttgcactatt 36180136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 25869347 - 25869389
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacga 295  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  25869347 tttatataattttaattttaggtaaactcgtacgaatttacga 25869389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 40766928 - 40766846
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcact 220  Q
    ||||||| ||| ||||||||  |||| |||||||||| |||||  ||||| ||||||||||||||||||| || || ||||||    
T  40766928 tattttgatgcaaagttgaatataacactttattatgatggttgggtatattttgcctttataattaagttattttttgcact 40766846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 16801156 - 16801203
Alignment:
Q  166 tttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    |||||| ||||||| ||||||||||||| ||||||||||| |||||||    
T  16801156 tttattttggtggtcatgtatactttgcatttataattaaatcatatt 16801203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 5650529 - 5650480
Alignment:
Q  18 atgataatgatgttatggaactttaaaagcattgatcttttgaagaaatta 68  Q
    |||| |||||||||||||||||||| ||| ||||| |||||||||||||||    
T  5650529 atgagaatgatgttatggaactttagaag-attgaccttttgaagaaatta 5650480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 35701785 - 35701863
Alignment:
Q  146 tgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatta 224  Q
    ||||||||||| | |||| | ||||| ||||| ||  ||||||||||||||| |||||| |||||||| |||| |||||    
T  35701785 tgctaagttgagcataacgcattattttggtgattgggtatactttgcctttttaattaggtcatattttgcattatta 35701863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 3032656 - 3032737
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcac 219  Q
    ||||||| | ||||||||| | |||| |||||||||||| |||  ||||| ||||  |||||||||||||||| || |||||    
T  3032656 tattttgattctaagttgagcataacactttattatggtagttgggtatattttgtatttataattaagtcattttttgcac 3032737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 21010477 - 21010395
Alignment:
Q  141 tttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||    
T  21010477 tttgatgctaagttgaacataactctttattatggtagttatgtatactttgtcattataattaagtcatattttgcactatt 21010395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 21010641 - 21010588
Alignment:
Q  18 atgataatgatgttatggaactttaaaagcattgatcttttgaagaaattaact 71  Q
    ||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||    
T  21010641 atgataatgatgttatgaaactttataaggattgaacttttgaagaaattaact 21010588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 24202794 - 24202876
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctc 335  Q
    ||||| |||||||||||||||||||||| | ||||||| || | || | ||||| ||| ||||||||||||| ||||| ||||    
T  24202794 tttatttaattttaattttaggtaaactcgtacgaattcacaagtcgagtttacctaggtaaaacgagttaagataaagtctc 24202876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 16439382 - 16439469
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||||||||||||||||| | |||| ||  ||| || | ||||| |||| |||||||||| |  ||||||||| ||||    
T  16439382 tttatataattttaattttaggtaaactcgtacgagttctcgagtcgagtttacctagacaaaacgagttgaggtaaactctcgagtt 16439469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 31995762 - 31995720
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacga 295  Q
    |||||||||||||||||||||||||||| | |||| |||||||    
T  31995762 tttatataattttaattttaggtaaactcgtacgagtttacga 31995720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 31975301 - 31975216
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||| | |||   ||||||||||| |||   |||| ||||||||| ||||||||||||||| | |||||||    
T  31975301 tattttgatgctaagttgagcataatgttttattatggtagtttgatataatttgcctttgtaattaagtcatatttttcactatt 31975216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 7835060 - 7835004
Alignment:
Q  284 acgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||| |||||||||| | ||||||||| ||||||||||| |  ||||||||||||||    
T  7835060 acgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcaagtt 7835004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 28546234 - 28546309
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||||||  |||||||||| ||||||||||||||    
T  28546234 tattttgatgctaagttgaacataactctttattaaggtggttatgtatgttttgcctttagaattaagtcatatt 28546309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 41979396 - 41979483
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||||||||||||||||| | |||| |||| ||||| |||||| |||| ||||||||||| |  ||||||||||||||    
T  41979396 tttatataattttaattttaggtaaactcgtacgagtttatgattcgaatttatatagttaaaacgagttgaggtaaactctcaagtt 41979483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 37810457 - 37810382
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    ||||||| || |||||||||| ||| ||||||||| || |||||||||||| ||| ||||||||||||||||||||    
T  37810457 tattttgatgttaagttgaacgtaattctttattacgggggttatgtatacgttgtctttataattaagtcatatt 37810382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 32241984 - 32241936
Alignment:
Q  23 aatgatgttatggaactttaaaagcattgatcttttgaagaaattaact 71  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  32241984 aatgatgttatggaattttaaaaggattgatcttttgaagaaattaact 32241936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 337
Target Start/End: Original strand, 2104323 - 2104406
Alignment:
Q  254 ttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaa 337  Q
    |||||||||||||||||||| |||||| | |||||||||||| |||||||||  ||| |||||| |||| | | ||||||||||    
T  2104323 ttatataattttaattttagataaactcgtacgaatttacgagtcaaatttatctaggtaaaacaagttgagacaaactctcaa 2104406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 24026342 - 24026413
Alignment:
Q  155 gaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactattagc 226  Q
    |||| ||||||||||| || |||||||||||||||||| ||||||||||  |||||||| ||| ||||||||    
T  24026342 gaacataactctttataatagtggttatgtatactttgtctttataattgtgtcatattttgcgctattagc 24026413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 38412030 - 38411944
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||| ||||||||||||||| | |||| |||||||||| | ||||||||| ||||||||||| |  ||||||||| ||||    
T  38412030 tttatataattt-aattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 38411944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2308473 - 2308423
Alignment:
Q  18 atgataatgatgttatggaactttaaaagcattgatcttttgaagaaatta 68  Q
    |||| |||||||||||||||||||| ||||||||| |||||||||||||||    
T  2308473 atgaaaatgatgttatggaactttagaagcattgaccttttgaagaaatta 2308423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 2103819 - 2103892
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcata 211  Q
    ||||||| ||||||||||||| |||   |||||||||||||||   ||||||||| ||||||||||||||||||    
T  2103819 tattttgatgctaagttgaacataatgttttattatggtggtttgatatactttgtctttataattaagtcata 2103892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 18727165 - 18727080
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||||| ||||  ||||||||||| |||   |||| | ||||||| ||||||||||||||| |||||||||    
T  18727165 tattttgatgctaagttgaacataacgttttattatggtagtttgatataatctgcctttgtaattaagtcatattttgcactatt 18727080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 32294233 - 32294281
Alignment:
Q  23 aatgatgttatggaactttaaaagcattgatcttttgaagaaattaact 71  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  32294233 aatgatgttataaaactttaaaaggattgatcttttgaagaaattaact 32294281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 13908640 - 13908682
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacga 295  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  13908640 tttatataattttaattttaggtaaactcgtacgaatttacga 13908682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 9731497 - 9731582
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||| ||||||| | ||||  ||||||||||| |||  ||||| ||||| ||| ||||||||||||||| |||||||||    
T  9731497 tattttgatgccaagttgagcataacattttattatggtagtttggtataatttgcttttgtaattaagtcatattttgcactatt 9731582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 30850910 - 30850995
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||| | ||||  ||||||||||| |||   |||| |||| |||| ||||||||||||||| |||||||||    
T  30850910 tattttgatgctaagttgagcataacgttttattatggtagtttcatatattttgtctttgtaattaagtcatattttgcactatt 30850995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 37654916 - 37654859
Alignment:
Q  166 tttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||| |||||||||  ||||||||||| ||||||||||||||||||| || ||||||    
T  37654916 tttataatggtggtttggtatactttgcatttataattaagtcatattttgtactatt 37654859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 45160706 - 45160638
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagtt 322  Q
    |||||||||||| ||||||||||||||| | |||| |||||||||| | ||||||||| ||||| |||||    
T  45160706 tttatataattt-aattttaggtaaactcgtacgagtttacgattcgagtttacatagctaaaatgagtt 45160638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 31846704 - 31846629
Alignment:
Q  148 ctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||||| | ||||  || |||||||| |||  ||||| ||| ||||||||||||||||||||| |||||||||    
T  31846704 ctaagttgagcataacgtttcattatggtagtttggtatagtttacctttataattaagtcatattttgcactatt 31846629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 24026168 - 24026221
Alignment:
Q  18 atgataatgatgttatggaactttaaaagcattgatcttttgaagaaattaact 71  Q
    ||||||||||||||||| || |||| ||| | ||| ||||||||||||||||||    
T  24026168 atgataatgatgttatgaaattttagaaggactgaacttttgaagaaattaact 24026221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 43304777 - 43304741
Alignment:
Q  184 tatactttgcctttataattaagtcatattatgcact 220  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  43304777 tatactttgcatttataattaagtcatattttgcact 43304741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 4870713 - 4870632
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcac 219  Q
    ||||||| || ||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||    
T  4870713 tattttgatgttaaattgaacattactctttattatggtggttatgtatactttgtctttataattatgtcatattttgcac 4870632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 35446990 - 35446919
Alignment:
Q  140 ttttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcata 211  Q
    ||||| ||||||||||||| |||| ||||||||| ||||||   |||||||| |||||||||||||||||||    
T  35446990 ttttgatgctaagttgaacataacactttattattgtggttgaatatactttacctttataattaagtcata 35446919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 4870576 - 4870507
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagtt 322  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||| ||||||||  ||||| |||||    
T  4870576 tttatataatattaattttaggtaaactcgtacgagtttacgattcaagtttacataagtaaaatgagtt 4870507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 33177433 - 33177361
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    ||||||| ||||||||||||| |||||||||||   ||| |||||||||| |||| ||||||||||||||| ||||    
T  33177433 tattttgatgctaagttgaacataactctttat---ggtagttatgtatattttgtctttataattaagtcttatt 33177361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 33177598 - 33177543
Alignment:
Q  16 caatgataatgatgttatggaactttaaaagcattgatcttttgaagaaattaact 71  Q
    ||||||||||||||||||| ||||||| ||| ||||| |||||||| |||||||||    
T  33177598 caatgataatgatgttatgaaactttagaaggattgaacttttgaaaaaattaact 33177543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 12521818 - 12521783
Alignment:
Q  252 atttatataattttaattttaggtaaacttgcacga 287  Q
    ||||||||||||||||||||||||||||| ||||||    
T  12521818 atttatataattttaattttaggtaaactcgcacga 12521783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 3007367 - 3007282
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||| | ||||  ||||||||| | |||  ||||| |||| |||| |||||||||||| || |||||||||    
T  3007367 tattttgatgctaagttgagcataacgttttattatgatagtttggtataatttgtctttgtaattaagtcatgttttgcactatt 3007282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 6387311 - 6387274
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatt 290  Q
    |||||||||||||||||||||||||||| | |||||||    
T  6387311 tttatataattttaattttaggtaaactcgtacgaatt 6387274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 12737630 - 12737546
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||| | ||||  ||||||| ||| |||  ||||| | ||||||| ||||||||||||||| |||||||||    
T  12737630 tattttgatgctaagttgagcataacgttttattagggtagttg-gtataatatgcctttgtaattaagtcatattttgcactatt 12737546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 27974376 - 27974348
Alignment:
Q  253 tttatataattttaattttaggtaaactt 281  Q
    |||||||||||||||||||||||||||||    
T  27974376 tttatataattttaattttaggtaaactt 27974348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 28031645 - 28031617
Alignment:
Q  253 tttatataattttaattttaggtaaactt 281  Q
    |||||||||||||||||||||||||||||    
T  28031645 tttatataattttaattttaggtaaactt 28031617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 33177299 - 33177259
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttac 293  Q
    |||||||||||||||||||||||||||| | |||| |||||    
T  33177299 tttatataattttaattttaggtaaactggtacgagtttac 33177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 9030653 - 9030578
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    ||||||| |||||||  ||||  |||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  9030653 tattttgatgctaagccgaacacaactctttattatggtggttatgtatactttgtctttgtaattaagtcatatt 9030578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 27163039 - 27163126
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||||||||||||||||||| |||| ||||||| || |||||||||| ||| ||| |||| |   |||||||||||||    
T  27163039 tttatataattttaattttaggtaaacttgtacgagtttacgagtcgaatttacataaatataacaagttgaggcaaactctcaagtt 27163126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 53644848 - 53644762
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||| ||||||||||||||| | |||| |||||||||| ||||||||||| ||||||||||| |  ||||||||| ||||    
T  53644848 tttatataattt-aattttaggtaaactcgtacgagtttacgattcgaatttacatagctaaaacgagttgaggtaaactctcgagtt 53644762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 30238135 - 30238073
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttata 200  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||  |||||||    
T  30238135 tattttgatgctaagttgaacataactctttattatgatggttatgtatactttatctttata 30238073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 27162870 - 27162954
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| |||||||| || | |||| ||||||||||||||||  |||||||||| |||||||||||||| ||||| |||||||||    
T  27162870 tattttgatgctaagt-gagcataacactttattatggtggttgggtatactttgtctttataattaagttatattttgcactatt 27162954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 342
Target Start/End: Original strand, 45731311 - 45731398
Alignment:
Q  255 tatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagttat 342  Q
    ||||||||||||||||||||||||||   |||| ||||| |||| | ||||||||| ||||||||||| |  ||||||||| ||||||    
T  45731311 tatataattttaattttaggtaaactcatacgagtttacaattcgagtttacatagctaaaacgagttgaggtaaactctcgagttat 45731398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 21386035 - 21385949
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatta 224  Q
    ||||||| ||||||||||| | ||||  ||||||||||| |||  ||||| ||| ||||| ||||||||||||||| | ||||||||    
T  21386035 tattttgatgctaagttgagcataacgttttattatggtagtttggtataattttcctttgtaattaagtcatatttttcactatta 21385949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 37833379 - 37833460
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctc 335  Q
    |||||||||||| |||||||||| || ||| |||| |||||||||| | ||||||||| ||||||||||| |  |||||||||    
T  37833379 tttatataattt-aattttaggttaatttgtacgagtttacgattcgagtttacatagttaaaacgagttgaggtaaactctc 37833460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 29690945 - 29691000
Alignment:
Q  18 atgataatgatgttatggaactttaaaagcattgatcttttgaagaaattaacttg 73  Q
    ||||||||||| || |||||||||| ||| ||||| |||||||| |||||||||||    
T  29690945 atgataatgatattgtggaactttagaaggattgaacttttgaaaaaattaacttg 29691000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 7437105 - 7437020
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||| | | ||||  ||||||||||| |||   |||| |||| |||| ||||||||||||||| |||||||||    
T  7437105 tattttgatgctaagttaagcataacgttttattatggtagtttgatataatttgtctttgtaattaagtcatattttgcactatt 7437020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 33693850 - 33693907
Alignment:
Q  166 tttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||||| | |||  ||||| ||||||||| ||||||||||||||| |||||||||    
T  33693850 tttattatgatagtttggtataatttgcctttgtaattaagtcatattttgcactatt 33693907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 49459058 - 49459095
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatt 290  Q
    |||||||||||||||||||||||||||| | |||||||    
T  49459058 tttatataattttaattttaggtaaactcgtacgaatt 49459095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 53836609 - 53836694
Alignment:
Q  255 tatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||| ||||||||||||||||||||| | |||| ||| ||| || | ||||  ||||||||||||||  |  ||||||||||||||    
T  53836609 tataaaattttaattttaggtaaactcgtacgagttttcgagtcgagtttatctagataaaacgagtcgaggtaaactctcaagtt 53836694  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 34019662 - 34019725
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaa 316  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||| ||||||||| |||||    
T  34019662 tttatataattttaattttaggtaaactcgtacgagtttacgattcaagtttacatagctaaaa 34019725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 46042423 - 46042492
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagt 207  Q
    ||||||| || |||||| ||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  46042423 tattttgatgttaagttaaacataactctttgttatgatggttatgtatactttgtctttataattaagt 46042492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 48966063 - 48965978
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||||||| |||   ||||||||||| |||  ||||| ||||||||| ||||||||||||||| |||||||||    
T  48966063 tattttgatgctaagttgaacataatgttttattatggtagtttagtataatttgcctttgtaattaagtcatattttgcactatt 48965978  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 34751089 - 34751002
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||||||||||||||| | | |||| |||||||||| | ||||||| | ||||||||||| |  ||||||||| ||||    
T  34751089 tttatataattttaattttaggtaaattcgtacgagtttacgattcgagtttacattgctaaaacgagttgaggtaaactctcgagtt 34751002  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 42637574 - 42637492
Alignment:
Q  252 atttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactct 334  Q
    |||||||||||||||||||||||||||||   |||| ||||| |||| | ||||||||| || |||||||| | |||||||||    
T  42637574 atttatataattttaattttaggtaaactcatacgagtttacaattcgagtttacataggtataacgagttgagataaactct 42637492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 35176822 - 35176736
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatta 224  Q
    ||||||| ||||||||||| | ||||  ||||||||||| |||   |||| ||||||||| ||||||| ||||||| ||||||||||    
T  35176822 tattttgatgctaagttgagcataacattttattatggtagtttgctataatttgcctttgtaattaaatcatattttgcactatta 35176736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 42637871 - 42637821
Alignment:
Q  18 atgataatgatgttatggaactttaaaagcattgatcttttgaagaaatta 68  Q
    ||||||||||||||||||||||| ||||| ||||  |||||||||||||||    
T  42637871 atgataatgatgttatggaacttcaaaaggattggacttttgaagaaatta 42637821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 2292820 - 2292735
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    |||||||  |||||||||||| ||||  ||||||||||| |||  ||||| ||||| ||| ||||||||||||||| |||| ||||    
T  2292820 tattttgacgctaagttgaacataacgttttattatggtagtttggtatagtttgcatttgtaattaagtcatattttgcaatatt 2292735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 8148014 - 8148099
Alignment:
Q  255 tatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||| ||||| ||||||||||||||| | |||| |||||||||| | ||||| ||| ||||||||||| |  ||||||||| ||||    
T  8148014 tataaaatttcaattttaggtaaactcgtacgagtttacgattcgagtttacctagctaaaacgagttgaggtaaactctcgagtt 8148099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 11578550 - 11578465
Alignment:
Q  255 tatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||| ||||| ||||||||||||||| | |||| |||||||||| | ||||| ||| ||||||||||| |  ||||||||| ||||    
T  11578550 tataaaatttcaattttaggtaaactcgtacgagtttacgattcgagtttacctaggtaaaacgagttgaggtaaactctcgagtt 11578465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 32759627 - 32759542
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatattatgcactatt 223  Q
    ||||||| ||||||||| | | ||||  ||||||||||| |||  ||||| ||||||||| ||||||||||||||| || ||||||    
T  32759627 tattttgatgctaagtttagcataacgttttattatggtagtttggtataatttgcctttgtaattaagtcatattttgtactatt 32759542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 226450 - 226490
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtgg 178  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  226450 tattttgatgctaagttgaacataactctttattatggtgg 226490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 3593790 - 3593865
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    |||||||||| |||||||||| | |   ||||||||||| |||  ||||| ||||||||| |||||||||||||||    
T  3593790 tattttggtgttaagttgaacattatgttttattatggtagtttggtataatttgcctttgtaattaagtcatatt 3593865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 33886358 - 33886303
Alignment:
Q  285 cgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||| | ||||||||| ||||||||||| | |||||||||| ||||    
T  33886358 cgaatttacgattcgagtttacatagctaaaacgagttgagataaactctcgagtt 33886303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 33957894 - 33957949
Alignment:
Q  285 cgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||||||||||| | ||||||||| ||||||||||| | |||||||||| ||||    
T  33957894 cgaatttacgattcgagtttacatagctaaaacgagttgagataaactctcgagtt 33957949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 42637709 - 42637634
Alignment:
Q  138 tattttggtgctaagttgaacttaactctttattatggtggttatgtatactttgcctttataattaagtcatatt 213  Q
    ||||||| ||||||||||||| |||||||||||||  || |||||| ||| |||  ||||||||| |||| |||||    
T  42637709 tattttgatgctaagttgaacgtaactctttattaccgtagttatgcatattttatctttataatcaagttatatt 42637634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 5209010 - 5208961
Alignment:
Q  18 atgataatgatgttatggaactttaaaagcattgatcttttgaagaaatta 68  Q
    |||| |||||||||||||||||||| ||| ||||| |||||||||||||||    
T  5209010 atgagaatgatgttatggaactttagaag-attgaccttttgaagaaatta 5208961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 50038063 - 50038021
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacga 295  Q
    |||||||||||||||||||||||||||||| | || |||||||    
T  50038063 tttatataattttaattttaggtaaacttgtaagagtttacga 50038021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 1242733 - 1242648
Alignment:
Q  255 tatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||| ||||||||| ||||||||||| | |||| |||||||||| | ||||  ||| ||||||||||| |  ||||||||| ||||    
T  1242733 tataaaattttaatcttaggtaaactcgtacgagtttacgattcgagtttatctaggtaaaacgagttgaggtaaactctcgagtt 1242648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 33886403 - 33886350
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttac 306  Q
    |||||||||||||||||||||||||||| | |||| ||||| | || |||||||    
T  33886403 tttatataattttaattttaggtaaactcgtacgagtttacaagtcgaatttac 33886350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 33957849 - 33957902
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttac 306  Q
    |||||||||||||||||||||||||||| | |||| ||||| | || |||||||    
T  33957849 tttatataattttaattttaggtaaactcgtacgagtttacaagtcgaatttac 33957902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 5208835 - 5208775
Alignment:
Q  165 ctttattatggtggttatgtatactttgcctttataattaagtc-atattatgcactatta 224  Q
    |||| |||||||||||  ||||||||||| |||||||||||||| ||||| | ||||||||    
T  5208835 cttttttatggtggtttggtatactttgcatttataattaagtctatatttttcactatta 5208775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 28403359 - 28403319
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttac 293  Q
    |||||||||||||||||||||||||||| | |||| |||||    
T  28403359 tttatataattttaattttaggtaaactcgtacgagtttac 28403319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 25100 - 25013
Alignment:
Q  253 tttatataattttaattttaggtaaacttgcacgaatttacgattcaaatttacatagataaaacgagttaatataaactctcaagtt 340  Q
    |||||| |||||||||| ||| |||||| | |||| |||||||||| | ||||||||| ||||||||||| |  ||||||||| ||||    
T  25100 tttataaaattttaattatagataaactcgtacgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 25013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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