View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_low_17 (Length: 374)
Name: NF14579_low_17
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 17767398 - 17767588
Alignment:
| Q |
14 |
caaaggtagaaaagaagttattacagtataatatataaactgcaatgaaaggcacaagaacacttccaatccaaagttgaccatctttctcctctacttc |
113 |
Q |
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| T |
17767398 |
caaaggtagaaaagaagttattatagttta-----taaactgcaataaaaggcataagaacacttccaatccaaagttgaccatctttctcctctacttc |
17767492 |
T |
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| Q |
114 |
agtcactgctctaacaatttttccctcactatcctccaacatctgcagcaacttaccttcaggactatacttcacagtcccaccatgtagcttacc |
209 |
Q |
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| T |
17767493 |
actcactgctctaacaacttttccctcactatcctccaatatctgcagcaatttaccttcaggactatacttcacaatcacaccatgtaacttacc |
17767588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 227 - 325
Target Start/End: Original strand, 17768190 - 17768288
Alignment:
| Q |
227 |
aagacggctagctaattaggtaaggtttaccgacctgccaatagacccttcacaaaaaacaaagaaggaaccatctttgcttaaggagatgccatttgg |
325 |
Q |
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| T |
17768190 |
aagatggctagctaaagaggtaaggtttacagacctgccgatagacccttcacaaaaaacaaagaaggaacaatctttgcttaaggaaatgccatttgg |
17768288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 36947199 - 36947062
Alignment:
| Q |
48 |
ataaactgcaatgaaaggcacaagaacacttccaatccaaagttgaccatctttctcctctacttcagtcactgctctaacaatttttccctcactatcc |
147 |
Q |
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| T |
36947199 |
ataaactgcaatgaaaggcatcaaaacacttcctatccagagtttaccatccttctcctccacttcactcactgctttaacaacttttccctcattgtcc |
36947100 |
T |
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| Q |
148 |
tccaacatctgcagcaacttaccttcaggactatactt |
185 |
Q |
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| T |
36947099 |
tccaatatttgcagaagtttaccgtcagggctatactt |
36947062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 36946528 - 36946479
Alignment:
| Q |
280 |
aaaaaacaaagaaggaaccatctttgcttaaggagatgccatttggaaat |
329 |
Q |
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| T |
36946528 |
aaaatacaaagaaggaaccatccttgcttaaggaaatcccatttggaaat |
36946479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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