View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_low_21 (Length: 335)
Name: NF14579_low_21
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 322
Target Start/End: Original strand, 6253434 - 6253750
Alignment:
| Q |
7 |
tactaccgacatgttatgtttaatgttcaga-gtcaatatttccaataaagaatttattaagttgacaaattcatggaagctggaaggaaagaagaagnn |
105 |
Q |
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| T |
6253434 |
tactaccgacatgttatgtttaatgttcagaagtcaatatttccaataaagaatttattaagttgacaaattcatggaagctggaaggaaagaagaagaa |
6253533 |
T |
|
| Q |
106 |
nnnnngaaggcaaacttgaatttactcagcaatttggaatgatacagcgaacatatcactgctcaagtcagtgcaaggtccactcccagttaagatgcta |
205 |
Q |
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| T |
6253534 |
gaaaagaaggcaaacttgaatttactcagcaatttggaatgatacagcgaacatatcactgctcaagtcagtgcaaggtccactcccagttaagatgcta |
6253633 |
T |
|
| Q |
206 |
ttctacacgaatgtatttgcatgagataaatgtttgaggtgatgtaatgttagagggtgaatgtttatgtaaattttacttaatttataaggatattgta |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6253634 |
ttctacacgaatgtatttgcatgagataaatgtttgaggtgatgtaatgttagagggtgaatgtttatgtaaattttacttaattgataaggatattgta |
6253733 |
T |
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| Q |
306 |
ttatatatgtagattat |
322 |
Q |
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|||||||||||| |||| |
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| T |
6253734 |
ttatatatgtaggttat |
6253750 |
T |
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