View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14579_low_27 (Length: 311)

Name: NF14579_low_27
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14579_low_27
NF14579_low_27
[»] chr8 (3 HSPs)
chr8 (111-295)||(44221809-44221979)
chr8 (155-253)||(44211733-44211831)
chr8 (17-51)||(44222039-44222073)
[»] chr5 (1 HSPs)
chr5 (158-253)||(6496106-6496201)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 111 - 295
Target Start/End: Complemental strand, 44221979 - 44221809
Alignment:
Q  111 tgaattgtccaccaaagaatattgaagagcataatatatagtactatatacataccaagttccatgtcaaatccacggttttcaagctcacgatattctt 210  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44221979 tgaattgtccaccaaagaatattgaagagcata--------------atacataccaagttccatgtcaaatccacggttttcaagctcacgatattctt 44221894  T
Q  211 gacacaatgcacatgattcacaacagcaatgaactaagcaatcacaacaaggagtgtctttgagcatgtattgttgtctcatttt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44221893 gacacaatgcacatgattcacaacagcaatgaactaagcaatcacaacaaggagtgtctttgagcatgtattgttgtctcatttt 44221809  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 44211831 - 44211733
Alignment:
Q  155 tatatacataccaagttccatgtcaaatccacggttttcaagctcacgatattcttgacacaatgcacatgattcacaacagcaatgaactaagcaatc 253  Q
    ||||||||||||||   |||||| |||||||||||| ||||| |||||||||||||||||||| || || |  ||||| ||||||||||  ||||||||    
T  44211831 tatatacataccaatgaccatgttaaatccacggttctcaagttcacgatattcttgacacaaggcgcaggcctcacagcagcaatgaatcaagcaatc 44211733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 44222073 - 44222039
Alignment:
Q  17 atactactataattcaaagtgatttaatttctatg 51  Q
    |||||||||||||||||||||||||||||||||||    
T  44222073 atactactataattcaaagtgatttaatttctatg 44222039  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 6496201 - 6496106
Alignment:
Q  158 atacataccaagttccatgtcaaatccacggttttcaagctcacgatattcttgacacaatgcacatgattcacaacagcaatgaactaagcaatc 253  Q
    |||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||| || ||||  || || ||||||||||  ||||||||    
T  6496201 atacataccaatgaccatgttaaatccacggttttcaagctcacgatattcttgacacaaggcgcatgcctcgcagcagcaatgaatcaagcaatc 6496106  T

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