View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_low_3 (Length: 589)
Name: NF14579_low_3
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Complemental strand, 35845 - 35380
Alignment:
| Q |
13 |
gagatgaacatacgagtttgaaaacaatgtgacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagt |
112 |
Q |
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| T |
35845 |
gagatgaacatacgagtttgaaaacaatgtcacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagt |
35746 |
T |
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| Q |
113 |
gataaaaggttataattaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaat |
212 |
Q |
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| T |
35745 |
gataaaaggttataattaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaat |
35646 |
T |
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| Q |
213 |
gaaagtagttgatgaataaagaaagaacgaaagaataatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaat |
312 |
Q |
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| T |
35645 |
gaaagtagttgatgaataaagaaagaacgaaagaaaaatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaat |
35546 |
T |
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| Q |
313 |
tggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaac |
412 |
Q |
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| T |
35545 |
tggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaac |
35446 |
T |
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| Q |
413 |
agcaaaatggcagccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
478 |
Q |
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| T |
35445 |
agcaaaatggcagccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
35380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 494 - 571
Target Start/End: Complemental strand, 35356 - 35279
Alignment:
| Q |
494 |
acatcaacaatgaatgaatgtgtgagagaaggtggctgaccaaaagtgaaaacatagccattgttggacatgagttgt |
571 |
Q |
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| T |
35356 |
acatcaacaatgaatgaatgtgtgagagaaggtggctgaccaaaagtgaaaacatagccattgttggacatgagttgt |
35279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 250 - 418
Target Start/End: Original strand, 8677160 - 8677325
Alignment:
| Q |
250 |
atacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccatagagaaccaaagaagctcccacatagg |
349 |
Q |
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| T |
8677160 |
atacttggtagaatccaacggaattgagcatgaggctcaagttcatcccggtgatagatatattggcaacagcagagaaccaaataagctcccacaaagg |
8677259 |
T |
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| Q |
350 |
gacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaacagcaaa |
418 |
Q |
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| T |
8677260 |
aacatgctt---agaagcagaataaccggtagcatttgagacgagaccgacaagagcagtaacagcaaa |
8677325 |
T |
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