View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_low_36 (Length: 263)
Name: NF14579_low_36
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 18551734 - 18551992
Alignment:
| Q |
1 |
aaaaatcaaatatgctctcaacctaacttatggtcaatgatattatacattttatctagcagttatatttgtttttcatgatatcatttatcaatgacat |
100 |
Q |
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| T |
18551734 |
aaaaatcaaatatgtcctcaaactaacttatggtcaatgatattatacattttatctagcagttatatctgtttttcatgatatcatttatcaatgacat |
18551833 |
T |
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| Q |
101 |
tttattaaccaatactgatatatgattgtttccctaaaaacatgatatgtgtttaat---nnnnnnnncaaattacacattattttaatttaatcttgaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18551834 |
tttattaaccaatactgatatatgattgtttccctaaaaacatgatatgtgtttaataaaaaaaaaaacaaattacacattattttaatttaatcttgaa |
18551933 |
T |
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| Q |
198 |
tatcattttgagatactta-nnnnnnnncttcttccgagaatttacatattttgatatt |
255 |
Q |
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| T |
18551934 |
tatcattttgagatacttattttttttttttcttccgagaatttacatattttgatatt |
18551992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 18543190 - 18543392
Alignment:
| Q |
1 |
aaaaatcaaatatgctctcaacctaacttatggtcaatgatattatacattttatctagcagttatatttgtttttcatgatatcatttatcaatgacat |
100 |
Q |
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|||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||| |
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| T |
18543190 |
aaaaatcatatatgtcctcaaactagcttatggtcaatgatattatacattttatctagcagctatatctttttttcctgatatcatttatcaatgacat |
18543289 |
T |
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| Q |
101 |
tttattaaccaatactgatatatgattgtttccctaaaaacatgatatgtgtttaatnnnnnnnncaaattacacattattttaatttaatcttgaatat |
200 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
18543290 |
tttattaaccattaccgatatatgattgtttccctaaaaacatgataagtgtttaataaaaaaat-aaattacacattattttaatttgatcttgaatat |
18543388 |
T |
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| Q |
201 |
catt |
204 |
Q |
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|||| |
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| T |
18543389 |
catt |
18543392 |
T |
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Back To:
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