View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14579_low_38 (Length: 252)

Name: NF14579_low_38
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14579_low_38
NF14579_low_38
[»] chr7 (28 HSPs)
chr7 (1-221)||(44961656-44961876)
chr7 (1-146)||(17748400-17748545)
chr7 (2-143)||(1797409-1797550)
chr7 (16-144)||(34659174-34659302)
chr7 (15-146)||(37514867-37514998)
chr7 (6-120)||(4706007-4706121)
chr7 (16-146)||(43346812-43346942)
chr7 (13-146)||(48804629-48804762)
chr7 (42-146)||(23823895-23823999)
chr7 (16-146)||(13095804-13095934)
chr7 (61-146)||(1605887-1605972)
chr7 (69-146)||(4228837-4228914)
chr7 (4-93)||(20247191-20247280)
chr7 (61-146)||(43925458-43925543)
chr7 (5-93)||(30827291-30827379)
chr7 (61-120)||(10047954-10048013)
chr7 (61-143)||(5069893-5069975)
chr7 (16-146)||(16802069-16802199)
chr7 (1-119)||(22973940-22974058)
chr7 (1-71)||(28744183-28744253)
chr7 (1-99)||(45697208-45697305)
chr7 (84-142)||(46414625-46414683)
chr7 (85-146)||(4195304-4195365)
chr7 (1-146)||(8734704-8734849)
chr7 (49-146)||(14650263-14650360)
chr7 (17-146)||(43862006-43862135)
chr7 (61-146)||(45447916-45448001)
chr7 (42-146)||(22268088-22268192)
[»] chr2 (38 HSPs)
chr2 (1-147)||(38962705-38962851)
chr2 (61-146)||(14853445-14853530)
chr2 (1-127)||(3848932-3849058)
chr2 (1-143)||(37560119-37560261)
chr2 (13-147)||(6358181-6358315)
chr2 (61-146)||(12864167-12864252)
chr2 (16-143)||(16034883-16035010)
chr2 (3-146)||(19976827-19976970)
chr2 (16-142)||(7787003-7787129)
chr2 (17-143)||(21286390-21286516)
chr2 (15-120)||(15234093-15234198)
chr2 (13-146)||(16813195-16813327)
chr2 (13-146)||(16852474-16852606)
chr2 (1-146)||(42770669-42770814)
chr2 (14-146)||(14169640-14169772)
chr2 (3-143)||(31596452-31596592)
chr2 (28-146)||(18846266-18846384)
chr2 (1-146)||(3643905-3644050)
chr2 (1-146)||(18902548-18902693)
chr2 (1-146)||(39201526-39201671)
chr2 (15-146)||(7747217-7747348)
chr2 (13-119)||(11069848-11069954)
chr2 (85-143)||(35946685-35946743)
chr2 (1-146)||(331444-331589)
chr2 (1-146)||(10026634-10026779)
chr2 (61-146)||(29422158-29422243)
chr2 (61-146)||(34356149-34356234)
chr2 (16-145)||(41187793-41187922)
chr2 (86-146)||(38005345-38005405)
chr2 (87-146)||(2550811-2550870)
chr2 (1-120)||(25540422-25540541)
chr2 (16-146)||(8410074-8410204)
chr2 (7-121)||(10823028-10823142)
chr2 (16-146)||(18649059-18649189)
chr2 (1-146)||(10046495-10046639)
chr2 (1-146)||(22593078-22593222)
chr2 (15-100)||(25604584-25604668)
chr2 (87-143)||(20533064-20533120)
[»] chr1 (39 HSPs)
chr1 (17-146)||(33004050-33004179)
chr1 (2-146)||(10336460-10336604)
chr1 (13-145)||(41663887-41664019)
chr1 (42-146)||(51437413-51437517)
chr1 (13-120)||(17389742-17389848)
chr1 (1-106)||(14254287-14254392)
chr1 (34-146)||(12744575-12744687)
chr1 (34-146)||(12755565-12755677)
chr1 (15-146)||(5855466-5855597)
chr1 (15-146)||(49078058-49078189)
chr1 (1-147)||(5503974-5504120)
chr1 (28-126)||(18649398-18649496)
chr1 (16-146)||(18915811-18915941)
chr1 (61-142)||(892376-892457)
chr1 (61-146)||(15465909-15465994)
chr1 (1-146)||(17642023-17642168)
chr1 (17-146)||(48798105-48798234)
chr1 (6-146)||(10422732-10422872)
chr1 (6-146)||(33418139-33418279)
chr1 (13-69)||(50094925-50094981)
chr1 (17-120)||(16956436-16956539)
chr1 (83-146)||(34877934-34877997)
chr1 (28-119)||(50503407-50503498)
chr1 (61-143)||(5144214-5144296)
chr1 (16-146)||(40288511-40288641)
chr1 (13-94)||(13262079-13262160)
chr1 (75-143)||(10173064-10173132)
chr1 (7-142)||(43959846-43959981)
chr1 (13-143)||(2567223-2567353)
chr1 (42-136)||(45361942-45362036)
chr1 (13-146)||(2980962-2981095)
chr1 (13-146)||(8763935-8764068)
chr1 (1-146)||(11397908-11398052)
chr1 (42-111)||(16263524-16263593)
chr1 (69-146)||(26258640-26258717)
chr1 (61-142)||(32151001-32151082)
chr1 (97-146)||(40226357-40226406)
chr1 (42-146)||(18808209-18808313)
chr1 (59-147)||(31576624-31576712)
[»] chr6 (22 HSPs)
chr6 (6-117)||(12606406-12606517)
chr6 (1-146)||(2271321-2271464)
chr6 (55-120)||(4596106-4596171)
chr6 (6-146)||(9179759-9179899)
chr6 (16-120)||(10311502-10311606)
chr6 (2-146)||(24671885-24672029)
chr6 (15-146)||(21898595-21898726)
chr6 (1-120)||(34954637-34954756)
chr6 (61-146)||(6606175-6606260)
chr6 (1-146)||(8938658-8938803)
chr6 (2-110)||(8888865-8888973)
chr6 (61-120)||(13468906-13468965)
chr6 (61-143)||(13036082-13036164)
chr6 (16-146)||(14107391-14107521)
chr6 (1-147)||(19089444-19089590)
chr6 (1-146)||(8611992-8612137)
chr6 (1-37)||(21872959-21872995)
chr6 (15-146)||(19230591-19230720)
chr6 (55-142)||(32048402-32048489)
chr6 (1-102)||(3601075-3601176)
chr6 (61-146)||(5253301-5253386)
chr6 (42-146)||(29333198-29333301)
[»] chr5 (38 HSPs)
chr5 (16-106)||(21149718-21149808)
chr5 (7-146)||(41163484-41163622)
chr5 (8-146)||(30349523-30349661)
chr5 (20-117)||(25467383-25467480)
chr5 (1-146)||(42086271-42086416)
chr5 (6-120)||(14588640-14588754)
chr5 (6-106)||(12081892-12081992)
chr5 (15-147)||(19572667-19572799)
chr5 (15-146)||(5731952-5732083)
chr5 (7-146)||(37263185-37263323)
chr5 (1-71)||(24875364-24875434)
chr5 (34-120)||(35245057-35245143)
chr5 (61-146)||(1538375-1538460)
chr5 (1-146)||(12704958-12705103)
chr5 (61-146)||(18136358-18136443)
chr5 (17-146)||(25417217-25417345)
chr5 (1-142)||(41800925-41801066)
chr5 (7-146)||(20682641-20682781)
chr5 (98-146)||(24500092-24500140)
chr5 (1-120)||(8513489-8513608)
chr5 (61-120)||(13664230-13664289)
chr5 (87-146)||(20525782-20525841)
chr5 (2-96)||(18262637-18262731)
chr5 (16-90)||(19839327-19839401)
chr5 (2-68)||(21375373-21375439)
chr5 (28-146)||(26077085-26077203)
chr5 (16-146)||(30995065-30995195)
chr5 (5-143)||(35813020-35813158)
chr5 (85-146)||(6767153-6767214)
chr5 (85-146)||(9812816-9812877)
chr5 (49-146)||(12766075-12766172)
chr5 (2-143)||(23247370-23247511)
chr5 (61-142)||(25950660-25950741)
chr5 (61-146)||(28857072-28857157)
chr5 (29-146)||(35403558-35403675)
chr5 (61-146)||(39728331-39728416)
chr5 (42-138)||(1898953-1899049)
chr5 (6-146)||(5079275-5079415)
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-146)||(9791-9936)
[»] chr4 (37 HSPs)
chr4 (1-142)||(5472866-5473007)
chr4 (16-146)||(47078406-47078536)
chr4 (13-146)||(1446774-1446907)
chr4 (13-146)||(29895735-29895868)
chr4 (1-146)||(38165975-38166120)
chr4 (3-83)||(14859302-14859382)
chr4 (13-120)||(20128283-20128390)
chr4 (1-146)||(2559255-2559400)
chr4 (1-146)||(8888970-8889115)
chr4 (20-129)||(24850664-24850772)
chr4 (1-130)||(30317197-30317326)
chr4 (49-146)||(33647669-33647766)
chr4 (1-146)||(49260683-49260828)
chr4 (42-146)||(53599008-53599112)
chr4 (87-146)||(15829647-15829706)
chr4 (87-146)||(31588632-31588691)
chr4 (29-139)||(295579-295688)
chr4 (69-143)||(6032726-6032800)
chr4 (61-142)||(37382497-37382578)
chr4 (85-146)||(41162984-41163045)
chr4 (16-116)||(14567937-14568037)
chr4 (1-57)||(14858747-14858803)
chr4 (1-116)||(21429279-21429394)
chr4 (3-146)||(43458561-43458704)
chr4 (16-146)||(3574479-3574609)
chr4 (35-117)||(17946467-17946548)
chr4 (1-143)||(40780879-40781021)
chr4 (1-95)||(45721085-45721179)
chr4 (85-146)||(27248376-27248437)
chr4 (85-146)||(34667704-34667765)
chr4 (3-120)||(36145235-36145352)
chr4 (61-146)||(55920982-55921067)
chr4 (61-141)||(20421727-20421806)
chr4 (2-146)||(24166398-24166542)
chr4 (42-146)||(38075381-38075485)
chr4 (15-119)||(42722609-42722713)
chr4 (42-146)||(52950030-52950134)
[»] chr8 (22 HSPs)
chr8 (42-146)||(6100419-6100523)
chr8 (7-142)||(33401823-33401958)
chr8 (28-146)||(44893323-44893441)
chr8 (13-146)||(2467148-2467281)
chr8 (13-146)||(8141049-8141182)
chr8 (1-143)||(4479314-4479455)
chr8 (41-146)||(10535462-10535566)
chr8 (1-146)||(14846523-14846667)
chr8 (42-146)||(30903283-30903386)
chr8 (15-146)||(10927553-10927684)
chr8 (56-146)||(13085471-13085561)
chr8 (2-120)||(35496274-35496391)
chr8 (42-146)||(1013036-1013140)
chr8 (42-146)||(38922473-38922577)
chr8 (7-146)||(3418537-3418676)
chr8 (61-146)||(9860073-9860159)
chr8 (13-99)||(18374004-18374090)
chr8 (13-146)||(36662351-36662484)
chr8 (6-47)||(993234-993275)
chr8 (97-146)||(8816980-8817029)
chr8 (85-146)||(14666173-14666234)
chr8 (85-146)||(15884657-15884718)
[»] chr3 (40 HSPs)
chr3 (1-142)||(47219091-47219232)
chr3 (42-146)||(51683014-51683118)
chr3 (1-146)||(7650170-7650315)
chr3 (1-146)||(15320129-15320274)
chr3 (1-146)||(30045764-30045909)
chr3 (6-142)||(3136718-3136853)
chr3 (14-146)||(3755513-3755645)
chr3 (61-143)||(31072824-31072906)
chr3 (1-146)||(10040500-10040644)
chr3 (17-146)||(11687144-11687273)
chr3 (61-146)||(13893869-13893954)
chr3 (61-146)||(45877397-45877482)
chr3 (87-146)||(24146433-24146492)
chr3 (59-146)||(46529947-46530034)
chr3 (6-120)||(928569-928683)
chr3 (4-146)||(3762994-3763135)
chr3 (61-139)||(6286075-6286153)
chr3 (1-119)||(52364819-52364937)
chr3 (85-146)||(25294903-25294964)
chr3 (61-146)||(29135856-29135941)
chr3 (13-146)||(49198294-49198427)
chr3 (2-119)||(53649697-53649814)
chr3 (42-146)||(41630572-41630676)
chr3 (85-141)||(49082772-49082828)
chr3 (1-76)||(7648753-7648828)
chr3 (2-145)||(35923643-35923786)
chr3 (55-146)||(49543462-49543553)
chr3 (15-146)||(54261169-54261300)
chr3 (96-146)||(4638097-4638147)
chr3 (16-146)||(35315899-35316029)
chr3 (29-146)||(10855327-10855444)
chr3 (61-146)||(29127862-29127947)
chr3 (1-146)||(33251605-33251750)
chr3 (89-146)||(34374525-34374581)
chr3 (85-146)||(42412877-42412938)
chr3 (61-146)||(48341963-48342048)
chr3 (16-120)||(6462381-6462485)
chr3 (1-69)||(23511587-23511655)
chr3 (6-146)||(32873573-32873712)
chr3 (86-146)||(55069783-55069843)
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-120)||(319394-319513)
scaffold0002 (61-146)||(516-601)
scaffold0002 (85-146)||(412128-412189)
[»] scaffold0005 (1 HSPs)
scaffold0005 (16-116)||(249338-249438)
[»] scaffold0384 (1 HSPs)
scaffold0384 (65-146)||(5919-6000)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44961656 - 44961876
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||||||||||||||  |||||||  ||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||||||| |||| | |||||||    
T  44961656 cccatcaaaggcggataactaatctgactcgtacgtagagacatgcgtactggtcaagcattgtcccccctaaaaattgaatctgatatttctcggatac 44961755  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggttcggcaacctctaccaagttacaatcttaattaaggaaacttaaatgtaaagctt 200  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  44961756 gtccttgaaaggagctccttgtcactgaaatccaaacaacttggtttgacaatctctaccaagttacgatcttaattaaggaaacttaaatgtaaagctt 44961855  T
Q  201 gcaccaacactgccgtactag 221  Q
    |||||||||||||||||||||    
T  44961856 gcaccaacactgccgtactag 44961876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 17748400 - 17748545
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||  ||||||||||||  |||||| ||||| ||| | ||||||||||||  ||| ||| | ||||||||||| ||||    
T  17748400 cccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacccggtattccccgaatac 17748499  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||| |||| |||  ||||  | ||||||||||||||||    
T  17748500 gtccttggaagaagctgcttgccactagagcccaaacaacttggtt 17748545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 1797550 - 1797409
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacg 101  Q
    |||||||||  ||||||||| |||  ||||| |||||| ||||||| ||||| ||| | ||||| ||||||  ||| ||| | |||||||| ||||||||    
T  1797550 ccatcaaagatggacgactagtccggctcgtgcgtagagacatgcgcactggccaagcgttgtttcccctgggaatcgaacccggtattcctcggatacg 1797451  T
Q  102 tccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    |||||  ||||||||||||  ||||| | ||||| |||||||    
T  1797450 tccttggaaggagctccttgccactggagcccaagcaacttg 1797409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 34659302 - 34659174
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||||| ||||||  |||||| ||||||||| | ||||||||| ||| ||| ||| | |||||||||||| ||| ||| |  |||||||    
T  34659302 cgactaatccggctcgtgcgtagaggcatgcgcactggtcaagcgttgttccccttgagaatcgaacccggtattccccgggtacatccctggaaggagc 34659203  T
Q  116 tccttatcactgaaacccaaacaacttgg 144  Q
    |||||  ||||| | ||||||||||||||    
T  34659202 tccttgccactggagcccaaacaacttgg 34659174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 37514998 - 37514867
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||| ||||||  ||||| |||||| ||||||| ||||  ||||| |||||||| |||||||| ||| |  ||||||||||| || ||||||  ||||||    
T  37514998 acgattaatccggctcgtgcgtagagacatgcgcactgaccaaacgttgttcccactgaaaatcgaacccagtattccccgggtatgtccttggaaggag 37514899  T
Q  115 ctccttatcactgaaacccaaacaacttggtt 146  Q
    || ||| ||| ||||  |||||||||||||||    
T  37514898 ctacttgtcattgaagtccaaacaacttggtt 37514867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 4706007 - 4706121
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| |||||||||||||| ||||| ||||||| |||||||| |||  |||| ||||||||||| ||||| ||| |  ||||| ||  |||||||| |    
T  4706007 caaaggtggacgactaatccagctcgtgcgtagaagcatgcgtaatggctaaacgttgttccccctaaaaatcgaaccatgtatttcctagatacgtcat 4706106  T
Q  106 taaaaggagctcctt 120  Q
    |  ||||||||||||    
T  4706107 tggaaggagctcctt 4706121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 43346812 - 43346942
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||||||||||||  |||||| || || |||   ||||||||| ||| ||||||| | |||||||||| |||||||| ||  |||||||    
T  43346812 cgactaatccggctcgtacgtagaggcatgcgcaccggccaagtgttgttccccttgagaattgaacccggtattccccagatacgtctttggaaggagc 43346911  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    |||||  ||||| |  |||||||||||||||    
T  43346912 tccttgccactggagtccaaacaacttggtt 43346942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 48804762 - 48804629
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||  ||| | ||||||  |||||| ||||| |||   ||||||||| ||  ||| ||| | ||||||||||||||||||||||  ||||    
T  48804762 ggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccttgggaatcgaacccggtattccccggatacgtccttggaagg 48804663  T
Q  113 agctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||  ||||| | ||||| ||||||||||    
T  48804662 agctccttgccactggagcccaagcaacttggtt 48804629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 23823999 - 23823895
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||| ||||| ||||| ||| ||| |||  |||||| |||||| |||||||||||||| ||||||||||||| ||| | |   |||||||||    
T  23823999 catgcgcactggccaaacgttgtttcccttgagaatcaaatctgatattcctcggatacgtccttagaaggagctccttaccaccggagtgcaaacaact 23823900  T
Q  142 tggtt 146  Q
    |||||    
T  23823899 tggtt 23823895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 13095934 - 13095804
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||| | ||||||  |||||| ||||| |||   ||||||||||||  ||| ||| | |||||||||||| ||||||||| ||||||||    
T  13095934 cgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatagaacccggtattccccgggtacgtccttgaaaggagc 13095835  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    |||||  ||| | | ||||| ||||||||||    
T  13095834 tccttgccacgggagcccaagcaacttggtt 13095804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 1605972 - 1605887
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||| |||| ||| | ||||||| |||| |||||||||  |||||||||||| ||| || |  |||||||||||||||    
T  1605972 ttgttccccctggaaatcgaaccaggtattctccgggtacgtccttggaaggagctccttgtcattggagtccaaacaacttggtt 1605887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 4228837 - 4228914
Alignment:
Q  69 cctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||| |||| ||| |||||||||| |||||||||||||  ||||||||||||  | ||| | ||||||||||||||||    
T  4228837 cctggaaatcgaacctggtattcctcggatacgtccttggaaggagctccttgccgctggagcccaaacaacttggtt 4228914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 20247191 - 20247280
Alignment:
Q  4 atcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccc 93  Q
    ||||| || ||||||||||||| || |||||||||| ||||| ||||||  ||| | ||||||||| ||| ||| ||| |||||||||||    
T  20247191 atcaatggtggacgactaatccgacccgtacgtagagacatgtgtactgcccaagcgttgttccccatgagaatcgaacctggtattccc 20247280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 43925543 - 43925458
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||  ||| ||| | |||||||||||| |||||||||  ||||||||||||  ||||| | ||||| ||||||||||    
T  43925543 ttgttccccctgggaatcgaacccggtattccccgggtacgtccttggaaggagctccttgccactggagcccaagcaacttggtt 43925458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 30827379 - 30827291
Alignment:
Q  5 tcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccc 93  Q
    |||||||  ||||||||||||  ||||| ||||||  |||||||||||| |||   |||||| |||||||||| ||| |||||||||||    
T  30827379 tcaaaggtagacgactaatccggctcgtgcgtagaggcatgcgtactggccaagtgttgttctccctgaaaatcgaacctggtattccc 30827291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 10047954 - 10048013
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctcctt 120  Q
    ||||||||||||  ||| ||| | ||||||||||||||||||||||  ||||||||||||    
T  10047954 ttgttccccctgggaatcgaacccggtattccccggatacgtccttggaaggagctcctt 10048013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 5069893 - 5069975
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    ||||||| |||| |||| ||| | |||||| ||||| |||||||||| ||| ||||||||  ||||| | |||||||||||||    
T  5069893 ttgttcctcctggaaatcgaacccggtatttcccgggtacgtccttagaagaagctccttgccactggagcccaaacaacttg 5069975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 16802199 - 16802069
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||||| ||||||  ||| || ||||| ||| | ||||||| ||| | ||| ||||| |||||||||||| |||||||||  |||||||    
T  16802199 cgactaatccggctcgtgcgtagaggcatacgcactggccaatcgttgttcctcctaagaatcgaatccggtattccccgggtacgtccttggaaggagc 16802100  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    || ||  ||||| | ||||  ||||||||||    
T  16802099 tcattgccactggagcccaggcaacttggtt 16802069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 22974058 - 22973940
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| ||||||||||||   ||| | ||||||  |||||  ||||| ||| | ||||||||||||| ||| ||| | |||||||||||  |||    
T  22974058 cccaccaaaggtggacgactaatctggctcatgcgtagacgcatgcacactggccaagcgttgttccccctgagaatcgaacccggtattccccgagtac 22973959  T
Q  101 gtccttaaaaggagctcct 119  Q
    ||||||  |||||||||||    
T  22973958 gtccttggaaggagctcct 22973940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 28744253 - 28744183
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccct 71  Q
    |||| |||||| |||||||||||||  |||||| |||||   ||||||||||| ||| |||||||||||||    
T  28744253 cccaccaaaggtggacgactaatccggctcgtatgtagaggtatgcgtactggccaagcattgttccccct 28744183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 45697208 - 45697305
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggata 99  Q
    |||| |||||| |||||||||| ||||||| | ||||||  |||||| |||| ||||   ||||||||| ||| ||| ||||||| |||||||||||||    
T  45697208 cccaccaaaggtggacgactaacccaactcatgcgtagaggcatgcgcactgatcaagtgttgttcccc-tgagaatcgaatctgatattccccggata 45697305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 46414683 - 46414625
Alignment:
Q  84 tggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaactt 142  Q
    ||||||||| ||| |||||||||||||||||||||||  ||| | | ||||||||||||    
T  46414683 tggtattccacgggtacgtccttaaaaggagctccttgccacgggagcccaaacaactt 46414625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 4195304 - 4195365
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||||||||||||   |||||||||||  ||||| | ||||| ||||||||||    
T  4195304 ggtattccccggatacgtccttggcaggagctccttgccactggagcccaagcaacttggtt 4195365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 8734704 - 8734849
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || |||||||||   ||||| ||| ||  |||||| ||||  ||| ||||||||||||   |||| ||| ||| |||||||  ||||     
T  8734704 cccaccaaaggtgggcgactaatctggctcgtgcgttgaggcatgcgcactgcccaagcattgttcccccaagaaatcgaacctgatattcccgagatat 8734803  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  ||||||  ||||||||||||||||    
T  8734804 gtccttggaaggagctccttgccactgacgcccaaacaacttggtt 8734849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 14650360 - 14650263
Alignment:
Q  49 actggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||| ||||||||| |||| |||| ||| | | ||||| |||| |||||||||  ||||||||||||  ||||  |  |||||||||||||||    
T  14650360 actggtcaagcattgttcctcctggaaatcgaacccgatattctccgggtacgtccttggaaggagctccttgccactagagtccaaacaacttggtt 14650263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 43862006 - 43862135
Alignment:
Q  17 gactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagct 116  Q
    |||||||||  ||| | ||||||  |||||| ||||| ||||| ||||||||||||  ||| ||| | |||||||||| |||||||| ||  || |||||    
T  43862006 gactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgggaatcgaacccggtattccccagatacgtctttggaaagagct 43862105  T
Q  117 ccttatcactgaaacccaaacaacttggtt 146  Q
    ||||  | ||  | ||||||||||||||||    
T  43862106 ccttgccgctagagcccaaacaacttggtt 43862135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 45448001 - 45447916
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||| ||||| |||| ||| |||||||| | ||| |||||||||  ||||||||||||  ||||  ||||||| ||||||||||    
T  45448001 ttgttctccctggaaatcgaacctggtatttctcgggtacgtccttggaaggagctccttgccactagaacccaagcaacttggtt 45447916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 22268088 - 22268192
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||| ||||  ||||||||||||  ||| ||| | ||||||||||   |||||||||  || |||||||||  ||||| | |||||||||||    
T  22268088 catgcgcactggccaaatgttgttccccctgggaatcgaacccggtattccccaagtacgtccttggaatgagctccttgccactggagcccaaacaact 22268187  T
Q  142 tggtt 146  Q
    |||||    
T  22268188 tggtt 22268192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 38962851 - 38962705
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||   || | ||||||  |||||| ||||| ||| | ||||||| ||||||||| ||| | ||||||||||||||||    
T  38962851 cccaccaaaggtggacgactaatccggttcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgaaaatcgaacccggtattccccggatac 38962752  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggttc 147  Q
    |||||| ||| |||||||||| ||||| |  ||||||||||||||||    
T  38962751 gtccttgaaatgagctccttaccactggagtccaaacaacttggttc 38962705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 14853445 - 14853530
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| |||||  ||||| | ||||||||||||||||    
T  14853445 ttgttccccctgaaaatcgaatctggtattccccggatacatccttgaaaggagttccttgccactggagcccaaacaacttggtt 14853530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 3848932 - 3849058
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||||| | ||||||||||| |||||| |||||| |||||||  |||| ||||| ||||| ||||||| ||| ||| | ||||||| || |||||    
T  3848932 cccatcaaaggtgaacgactaatccgactcgtgcgtagagacatgcgccctggccaaacgttgtttcccctgataatcgaacccggtattctccagatac 3849031  T
Q  101 gtccttaaaaggagctccttatcactg 127  Q
    |||||| ||| || |||||||||||||    
T  3849032 gtccttgaaatgaactccttatcactg 3849058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 37560261 - 37560119
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||||| |||||| ||||||  ||||| ||||||  |||||| ||||  ||||| ||||||||| ||| ||| ||| |||||||||| ||| |||    
T  37560261 cccatcaaaggtggacgattaatccggctcgtgcgtagaggcatgcgcactgaccaaacgttgttccccttgagaatcgaacctggtattcctcgggtac 37560162  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    ||||||  |||||||| |||| ||||| | |||||||||||||    
T  37560161 gtccttggaaggagcttcttaccactggagcccaaacaacttg 37560119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 6358181 - 6358315
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||  ||| | ||||||  |||||| ||||| |||   |||||||||||| |||| ||||||||||||||||||||||||||||  || |    
T  6358181 ggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctggaaatcgaatctggtattccccggatacgtcctttgaatg 6358280  T
Q  113 agctccttatcactgaaacccaaacaacttggttc 147  Q
    |||| |||  ||||| | ||||||||||| |||||    
T  6358281 agcttcttgccactggagcccaaacaactcggttc 6358315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 12864252 - 12864167
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||| |||| ||||| ||||||||||| ||||||| ||  |||||||||||| |||||| | ||||||||||||||||    
T  12864252 ttgttccccctggaaatcgaatccggtattccccgaatacgtcattggaaggagctccttgtcactggagcccaaacaacttggtt 12864167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 16035010 - 16034883
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  |||||||||| |  |||||  ||||||||| | ||||||| ||||||||| ||| | |||||||| |||||||||||||  ||||||     
T  16035010 cgactaatccggctcgtacgtataggcatgcacactggtcaagcgttgttccgcctgaaaatcgaacccggtattcctcggatacgtccttggaaggagt 16034911  T
Q  116 tccttatcactgaaacccaaacaacttg 143  Q
    |||||| |||||||  |||| |||||||    
T  16034910 tccttaccactgaagtccaagcaacttg 16034883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 19976827 - 19976970
Alignment:
Q  3 catcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgt 102  Q
    ||||||||| || |||||||| | |||  | |||||| ||||||| ||||  ||||| || |||||||||||||| ||| | ||||||||||||||||||    
T  19976827 catcaaaggtgggcgactaattcgacttatgcgtagagacatgcgcactgaccaaacgttattccccctgaaaatcgaacccggtattccccggatacgt 19976926  T
Q  103 ccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||  || ||||| |||  ||||| | ||||||||| ||||||    
T  19976927 ccttggaaagagctacttgccactggagcccaaacaatttggtt 19976970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 7787129 - 7787003
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||||| ||||||  |||||||||||| |||  ||||||||||||| |||| ||| | |||||||||||| ||||||||  |||||||     
T  7787129 cgactaatccggctcgtgcgtagaggcatgcgtactggccaagtattgttccccctggaaatcgaacccggtattccccgggtacgtcctagaaaggagt 7787030  T
Q  116 tccttatcactgaaacccaaacaactt 142  Q
    |||||  ||||| | ||||| ||||||    
T  7787029 tccttgccactggagcccaaccaactt 7787003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 21286516 - 21286390
Alignment:
Q  17 gactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagct 116  Q
    |||||||||| ||||| ||||||  |||||| ||||||||| | ||||| | ||||  ||| ||| | ||||||||||||||||||||||  ||||||||    
T  21286516 gactaatccagctcgtgcgtagaggcatgcgcactggtcaagcgttgtttcgcctgggaatcgaacccggtattccccggatacgtccttggaaggagct 21286417  T
Q  117 ccttatcactgaaacccaaacaacttg 143  Q
    ||||  ||||| | | |||||||||||    
T  21286416 ccttgccactggagctcaaacaacttg 21286390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 15234093 - 15234198
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||||||||| |||| || ||||||  |||||| |||||||||   ||||||||||||| ||| ||| || ||||||||||| |||||||||  ||||||    
T  15234093 acgactaatctaacttgtgcgtagaggcatgcgcactggtcaagtgttgttccccctgagaatcgaacctagtattccccgggtacgtccttggaaggag 15234192  T
Q  115 ctcctt 120  Q
    ||||||    
T  15234193 ctcctt 15234198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 16813195 - 16813327
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||  ||||| | ||||  |||||||||||||||||| ||||| ||||||||| |||||  |||||||| |||  |||||||||  ||||    
T  16813195 ggacgactaatccggctcgtgcatagaggcatgcgtactggtcaaacgttgtt-cccctgaaagttgaacttggtattctccgagtacgtccttggaagg 16813293  T
Q  113 agctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||| ||| || | || |||||||| ||||    
T  16813294 agctccttgtcagtggagcctaaacaactaggtt 16813327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 16852474 - 16852606
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||  ||||| | ||||  |||||||||||||||||| ||||| ||||||||| |||||  |||||||| |||  |||||||||  ||||    
T  16852474 ggacgactaatccggctcgtgcatagaggcatgcgtactggtcaaacgttgtt-cccctgaaagttgaacttggtattctccgagtacgtccttggaagg 16852572  T
Q  113 agctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||| ||| || | || |||||||| ||||    
T  16852573 agctccttgtcagtggagcctaaacaactaggtt 16852606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 42770669 - 42770814
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||| ||||||  ||||| || |||  |||||| ||||| ||| | ||||||||||||| ||||||| | |||||| | |||||||    
T  42770669 cccaccaaaggtggacgattaatccggctcgtgcgaagaggcatgcgcactggccaagcgttgttccccctgagaattgaacccggtatttctcggatac 42770768  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||| ||  ||||| | ||||| ||||||||||    
T  42770769 gtccttggaaggagctctttgccactggagcccaagcaacttggtt 42770814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 14169640 - 14169772
Alignment:
Q  14 gacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagga 113  Q
    ||||||||||||  ||| | |||||| ||||||| |||||||||   |||||||||| || ||| ||| | | ||||||||| ||||||||||  || ||    
T  14169640 gacgactaatccggctcatgcgtagagacatgcgcactggtcaagtgttgttcccccggagaatcgaacccgatattccccgaatacgtccttggaaaga 14169739  T
Q  114 gctccttatcactgaaacccaaacaacttggtt 146  Q
     |||||| |||||| | ||||||||||||||||    
T  14169740 tctccttgtcactggagcccaaacaacttggtt 14169772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 31596452 - 31596592
Alignment:
Q  3 catcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgt 102  Q
    |||||||||  ||||| |||| || ||| | |||||||  ||| | ||||| ||||||||||||||||||||||| ||| ||| |||||  |||||||||    
T  31596452 catcaaaggtagacgattaattcagctcatgcgtagaagtatgtgcactggccaaacattgttccccctgaaaatagaacctgatattctacggatacgt 31596551  T
Q  103 ccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    | ||  ||||||||||||  ||||| || |||| |||||||    
T  31596552 ctttggaaggagctccttgccactggaatccaagcaacttg 31596592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 18846266 - 18846384
Alignment:
Q  28 ctcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactg 127  Q
    |||||||||| |  |||||| ||||  ||| | ||||| ||||||||||||||||| | |||||| |   ||||||||| ||| || ||||||| |||||    
T  18846266 ctcgtacgtaaaggcatgcgcactgcccaagcgttgtttcccctgaaaattgaatcagatattcctcaagtacgtccttgaaatgaactccttaccactg 18846365  T
Q  128 aaacccaaacaacttggtt 146  Q
    ||||| |||||||||||||    
T  18846366 aaacctaaacaacttggtt 18846384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 3643905 - 3644050
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||| ||| | ||||||  |||||| ||||| ||| | ||||||| | |  ||||  || | ||||||||||||||||    
T  3643905 cccaccaaaggtggacgactaatccagctcatgcgtagaggcatgcgcactggccaagcgttgttcctcgtagaaatcaaacccggtattccccggatac 3644004  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  || |||||||||  ||||| | ||||| ||||||||||    
T  3644005 gtccttggaatgagctcctttccactggagcccaagcaacttggtt 3644050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 18902548 - 18902693
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || |||||||||   ||||| |||||| ||| ||| ||||||||| | ||||||||| ||  ||| ||| | |||||||||||  |||    
T  18902548 cccaccaaaggtgggcgactaatctggctcgtgcgtagagacacgcgcactggtcaagcgttgttccccgtgggaatcgaacccggtattccccgagtac 18902647  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  ||||| | ||||| ||||||||||    
T  18902648 gtccttggaaggagctccttgccactggagcccaagcaacttggtt 18902693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 39201526 - 39201671
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| | |||||||||||  ||| | ||||||  |||||  ||||| ||||||||||||||||||| ||| ||||  |||||||| ||  |||    
T  39201526 cccaccaaaggtgaacgactaatccggctcatgcgtagaggcatgcacactggccaaacattgttccccctgagaatcgaattcggtattcctcgagtac 39201625  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  ||||  | ||||| ||||||||||    
T  39201626 gtccttggaaggagctccttgccactatagcccaatcaacttggtt 39201671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 7747348 - 7747217
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||||||||||  ||| | ||||||  |||||  ||||| ||||| ||||||| |||   ||| ||| | ||||||||||||||||||||||  ||||||    
T  7747348 acgactaatccggctcatgcgtagaggcatgcacactggccaaacgttgttcctcctaggaatcgaacccggtattccccggatacgtccttggaaggag 7747249  T
Q  115 ctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||| | ||||| ||||||||||    
T  7747248 ctccttgccactggagcccaagcaacttggtt 7747217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 11069954 - 11069848
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    ||||||||||| || ||||| ||||||   ||||| ||||| ||||| |||||||||||   ||| ||| |||||||||||||| |||||||||  || |    
T  11069954 ggacgactaattcagctcgtgcgtagaggtatgcgcactggccaaacgttgttccccctcggaatcgaacctggtattccccgggtacgtccttggaatg 11069855  T
Q  113 agctcct 119  Q
    |||||||    
T  11069854 agctcct 11069848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 35946743 - 35946685
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    ||||||||||||||||||||||| || |||||||||| ||| ||| ||||| |||||||    
T  35946743 ggtattccccggatacgtccttagaatgagctccttaccacggaagcccaagcaacttg 35946685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 331589 - 331444
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || ||||||||||  ||| | ||||||| |||||| ||||| |||   ||||||||||||  ||| ||| | |||||||||||| |||    
T  331589 cccaccaaaggtgggcgactaatccggctcatgcgtagaagcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccgggtac 331490  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  || |||||| ||  ||||| | ||||| ||||||||||    
T  331489 gtccttggaaagagctcattgccactggagcccaagcaacttggtt 331444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 10026634 - 10026779
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || ||||||||||  ||| | ||||||  |||||| ||||| ||||| ||||||||||||| ||| ||| | ||||||  |||  |||    
T  10026634 cccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgagaatcgaacccggtattttccgagtac 10026733  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  || || | ||||| ||||||||||    
T  10026734 gtccttggaaggagctccttgccattggagcccaagcaacttggtt 10026779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 29422243 - 29422158
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||| ||| |||| ||| |  ||||||||||| ||||||||| |||||||||||||   |||| | ||||||||||||||||    
T  29422243 ttgttccctctggaaatcgaacccagtattccccgggtacgtccttgaaaggagctccttgctactggagcccaaacaacttggtt 29422158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 34356234 - 34356149
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||| |||| ||| | |||||||||| |||||||||||  ||  ||||||||  ||||| | ||||||||||||||||    
T  34356234 ttgttccccctggaaatcgaacccggtattccccagatacgtccttggaaatagctccttgccactggagcccaaacaacttggtt 34356149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 41187922 - 41187793
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||| | ||||||  |||||| ||||||||| | |||||   ||| | ||||||||  |||||||| |||||||||||||  |||||||    
T  41187922 cgactaatccgtctcatgcgtagaggcatgcgcactggtcaagcgttgtttttcctaagaattgaattcggtattcctcggatacgtccttggaaggagc 41187823  T
Q  116 tccttatcactgaaacccaaacaacttggt 145  Q
    |||||  ||| ||| |||| ||||||||||    
T  41187822 tccttgccaccgaagcccagacaacttggt 41187793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 38005405 - 38005345
Alignment:
Q  86 gtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||| |||||||||  ||||||||||||  ||||| | ||||||||||||||||    
T  38005405 gtattccccgggtacgtccttggaaggagctccttgccactggagcccaaacaacttggtt 38005345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 2550870 - 2550811
Alignment:
Q  87 tattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||||||||||  ||||||||||||  ||||| | ||||| ||||||||||    
T  2550870 tattccccggatacgtccttgtaaggagctccttgccactggagcccaagcaacttggtt 2550811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 25540422 - 25540541
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||  ||||| ||||||  |||||| ||||| ||| | |||||||||||   ||| ||| |  ||||||||| |||||    
T  25540422 cccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctaggaatcgaacccagtattccccagatac 25540521  T
Q  101 gtccttaaaaggagctcctt 120  Q
    ||||||  || |||||||||    
T  25540522 gtccttggaatgagctcctt 25540541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 8410204 - 8410074
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||||| ||||||  |||||| ||||| |||   ||||||||||||  ||| ||| | | ||||| |||| |||||||||  |||||||    
T  8410204 cgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacccgatattctccgggtacgtccttggaaggagc 8410105  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    |||||  ||||| | ||||| ||||||||||    
T  8410104 tccttgccactggagcccaagcaacttggtt 8410074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 10823142 - 10823028
Alignment:
Q  7 aaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcctt 106  Q
    ||||| || ||||||||||  ||||| ||||||  |||||| ||||| ||| | ||||||| ||||  |||  || | |||||||||||| |||||||||    
T  10823142 aaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcaaacccggtattccccgggtacgtcctt 10823043  T
Q  107 aaaaggagctcctta 121  Q
      |||||||||||||    
T  10823042 ggaaggagctcctta 10823028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 18649059 - 18649189
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    |||||||||| |||| | ||||||  |||||| ||||  |||| |||||||| ||||| ||| ||||| ||||||||| | || | |||||  ||| |||    
T  18649059 cgactaatccgactcatgcgtagaggcatgcgcactgcccaaatattgttcctcctgagaatcgaatccggtattccctgaatgcatccttggaagcagc 18649158  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    | |||  ||||| | ||||||||||||||||    
T  18649159 ttcttgccactggagcccaaacaacttggtt 18649189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 10046495 - 10046639
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || ||||||||||  ||| | ||||||  |||||| |||| |||||| ||||| ||| ||| ||| ||| | ||||||| ||||||||    
T  10046495 cccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactg-tcaaacgttgtttcccttgagaatcgaacccggtattctccggatac 10046593  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    || |||  ||||||||||||  || || | ||||| ||||||||||    
T  10046594 gttcttggaaggagctccttgccattggagcccaagcaacttggtt 10046639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22593222 - 22593078
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||  ||| | ||||||  |||||| ||||| ||| | ||||||||||||  ||| |||    ||||||||||| |||    
T  22593222 cccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaa-cgttgttccccctgggaatcgaactcagtattccccgggtac 22593124  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  ||||| | | ||| ||||||||||    
T  22593123 gtccttggaaggagctccttgccactggagcacaagcaacttggtt 22593078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 25604668 - 25604584
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| ||||||||||| | ||||||  ||||| |||||||||||| ||||| |||||| |||| ||||| ||||||  ||||||||    
T  25604668 acgattaatccaactcatgcgtagaggcatgcatactggtcaaacgttgtt-cccctggaaatcgaatccggtattttccggatac 25604584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 20533120 - 20533064
Alignment:
Q  87 tattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    |||||||| |||| ||| ||  ||||||||||||| ||||||| |||||||||||||    
T  20533120 tattccccagatatgtctttggaaggagctccttaacactgaagcccaaacaacttg 20533064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 33004050 - 33004179
Alignment:
Q  17 gactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagct 116  Q
    |||||||||  ||||| ||||||  |||||| ||||| ||| ||||||| |||||| |||| ||||| | ||||||||||||||||||||  ||||||||    
T  33004050 gactaatccggctcgtgcgtagaggcatgcgcactggccaagcattgtttcccctggaaatcgaatccgatattccccggatacgtccttggaaggagct 33004149  T
Q  117 ccttatcactgaaacccaaacaacttggtt 146  Q
    ||| ||||||| | ||||| ||||||||||    
T  33004150 cctcatcactggagcccaagcaacttggtt 33004179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 10336604 - 10336460
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacg 101  Q
    |||||||||| |||||| ||||||  ||| | ||||||  |||||| ||||||||| | ||||||||||||||||| ||| | | ||||| |||||||||    
T  10336604 ccatcaaaggtggacgattaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaacccgatattctccggatacg 10336505  T
Q  102 tccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    || ||  ||||||||||||  ||||| |||||| | |||||||||    
T  10336504 tctttggaaggagctccttgccactggaacccagataacttggtt 10336460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 41663887 - 41664019
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||| ||| | ||||||  |||||| ||||  |||   ||||||||||||  ||| ||| | ||||||||||||||||||||||| ||||    
T  41663887 ggacgactaatccagctcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtccttagaagg 41663986  T
Q  113 agctccttatcactgaaacccaaacaacttggt 145  Q
    ||||||||  ||||| | |||||||||||||||    
T  41663987 agctccttgccactggagcccaaacaacttggt 41664019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 51437517 - 51437413
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||||||| | ||||||||| ||  ||| ||| | | |||||| ||||||||||||| |||||||||| || |||||||| |||||||||||    
T  51437517 catgcgcactggtcaagcgttgttccccatgggaatcgaacccgatattcctcggatacgtccttgaaaggagctcattgtcactgaagcccaaacaact 51437418  T
Q  142 tggtt 146  Q
    |||||    
T  51437417 tggtt 51437413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 17389848 - 17389742
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||| ||| | ||| ||  |||||| |||||||||||||||||||||| |||||| ||||| | |||| |||||| ||||| || |||||    
T  17389848 ggacgactaatccagctcatgcgtggaggcatgcgcactggtcaaacattgttccccc-gaaaatcgaatccgatatttcccggaaacgtcattgaaagg 17389750  T
Q  113 agctcctt 120  Q
    ||||||||    
T  17389749 agctcctt 17389742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 14254287 - 14254392
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||||| |||||||||||||  ||| | |||| |  |||||||||||| ||| | ||||||||||||||||| |||   ||||||||||| ||||    
T  14254287 cccatcaaaggtggacgactaatccggctcatgcgtaaaggcatgcgtactggccaagcgttgttccccctgaaaatcgaactcggtattccccgaatac 14254386  T
Q  101 gtcctt 106  Q
    ||||||    
T  14254387 gtcctt 14254392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 12744575 - 12744687
Alignment:
Q  34 cgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaaccc 133  Q
    |||||| ||||||| ||| ||||| | ||||||||||||||||| ||||||| |||||| | |||||||||||  |||||| ||  | |||||| |  ||    
T  12744575 cgtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgtccttggaaggagttcaatgtcactggagtcc 12744674  T
Q  134 aaacaacttggtt 146  Q
    |||||||||||||    
T  12744675 aaacaacttggtt 12744687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 12755565 - 12755677
Alignment:
Q  34 cgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaaccc 133  Q
    |||||| ||||||| ||| ||||| | ||||||||||||||||| ||||||| |||||| | |||||||||||  |||||| ||  | |||||| |  ||    
T  12755565 cgtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgtccttggaaggagttcaatgtcactggagtcc 12755664  T
Q  134 aaacaacttggtt 146  Q
    |||||||||||||    
T  12755665 aaacaacttggtt 12755677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 5855597 - 5855466
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||||||||||  ||| | ||||||  |||||| ||||| ||| | ||||||| ||||  ||| ||| | ||||||||||| ||||||||||  ||||||    
T  5855597 acgactaatccgcctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgaatacgtccttggaaggag 5855498  T
Q  115 ctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||| | ||||||||||||||||    
T  5855497 ctccttgccactggagcccaaacaacttggtt 5855466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 49078189 - 49078058
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||||||||||  ||| | ||||||  |||||| ||||| |||   ||||| ||||||  ||| ||| | ||||||||||||||||||||||| ||||||    
T  49078189 acgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcgaacccggtattccccggatacgtccttagaaggag 49078090  T
Q  115 ctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||| | ||||| ||||||||||    
T  49078089 ctccttgccactggagcccaagcaacttggtt 49078058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 5504120 - 5503974
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||||| |||||||||||||  ||| | ||||||  |||| | |||  |||| | |||||  |||||| ||| ||| ||| |||||||| |||||    
T  5504120 cccatcaaaggtggacgactaatccggctcatgcgtagaggcatgtgcactaatcaagcgttgttttccctgagaatcgaacctgatattccccagatac 5504021  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggttc 147  Q
    || ||   ||||||||||||  ||||| |||||||||||||||||||    
T  5504020 gttctcggaaggagctccttgccactggaacccaaacaacttggttc 5503974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 18649398 - 18649496
Alignment:
Q  28 ctcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcact 126  Q
    ||||||||||||  |||||| ||||||||| | ||||||||||||||||| ||| | | ||||| || |||||||||||  ||||||||| ||| ||||    
T  18649398 ctcgtacgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaacccgatattctccagatacgtccttggaaggagctcattaccact 18649496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 18915941 - 18915811
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||||| ||||||  |||||  ||||| |||   ||||||||||||  ||| ||| | |||||||||||| |||||||||  ||| |||    
T  18915941 cgactaatccggctcgtgcgtagaggcatgcacactggccaagtgttgttccccctgggaatcgaacccggtattccccgggtacgtccttggaagaagc 18915842  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    |||||  ||||||| ||||||||||||||||    
T  18915841 tccttgccactgaagcccaaacaacttggtt 18915811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 892376 - 892457
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaactt 142  Q
    |||||||||||   ||| ||| | ||||||||||| |||||||||| |||||||||||||  ||||||| ||||||||||||    
T  892376 ttgttccccctaggaatcgaacccggtattccccgaatacgtccttgaaaggagctccttgccactgaagcccaaacaactt 892457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 15465994 - 15465909
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||| |||| ||| ||||||||||||  ||||||||||  ||||||| | || |||||| | ||||||||||||||||    
T  15465994 ttgttccccctggaaatcgaacctggtattccccaaatacgtccttggaaggagccctttgtcactggagcccaaacaacttggtt 15465909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 17642023 - 17642168
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||  ||||| ||||||  |||||| ||||| |||   ||||||||||||  ||| ||| |  ||||| || || |||    
T  17642023 cccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacccagtatttcctgggtac 17642122  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||| |  |||||||||||| |||||| | ||||||||||||||||    
T  17642123 gtccgtggaaggagctccttgtcactggagcccaaacaacttggtt 17642168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 48798105 - 48798234
Alignment:
Q  17 gactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagct 116  Q
    |||||||||  ||| | ||||||  |||||| ||| ||||| | |||||||||||| |||| ||| | | ||||||||||||||||| ||  ||||||||    
T  48798105 gactaatccggctcatgcgtagaggcatgcgcactagtcaagcgttgttccccctggaaatcgaacccgatattccccggatacgtcattggaaggagct 48798204  T
Q  117 ccttatcactgaaacccaaacaacttggtt 146  Q
    ||||  ||||| | ||| ||||||||||||    
T  48798205 ccttgccactggagccccaacaacttggtt 48798234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 10422872 - 10422732
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| |||||||||||||  ||| | ||||||  |||||| ||||| |||   ||||||| |||  |||| ||| | ||||||||||| ||||||| |    
T  10422872 caaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttcctcctagaaatcgaacccggtattccccgaatacgtcat 10422773  T
Q  106 taaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |  ||||||||||||  ||||| | ||||||||||||||||    
T  10422772 tggaaggagctccttgccactgtagcccaaacaacttggtt 10422732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 33418139 - 33418279
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| |||||||||||||  ||||| | ||||  |||||| ||||| ||| | |||| ||||||   ||| ||||| ||||||| |||| |||||| |    
T  33418139 caaaggtggacgactaatccggctcgtgcatagaggcatgcgcactggccaagcgttgtcccccctaggaatcgaatccggtattctccgggtacgtctt 33418238  T
Q  106 taaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |  ||||||||||||  ||||| | ||||||||||||||||    
T  33418239 tggaaggagctccttgccactggagcccaaacaacttggtt 33418279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 50094981 - 50094925
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttcccc 69  Q
    ||||||||||||| |||| | ||||||| |||||||||||||||||| |||||||||    
T  50094981 ggacgactaatccgactcatgcgtagaagcatgcgtactggtcaaacgttgttcccc 50094925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 16956539 - 16956436
Alignment:
Q  17 gactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagct 116  Q
    |||||||||  ||||| ||||||  |||||| ||||||||||| ||||| ||||||| ||  |||   |||||||||||| |||||||||  ||||||||    
T  16956539 gactaatccggctcgtgcgtagaggcatgcgcactggtcaaacgttgttacccctgagaaccgaacacggtattccccgggtacgtccttggaaggagct 16956440  T
Q  117 cctt 120  Q
    ||||    
T  16956439 cctt 16956436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 34877997 - 34877934
Alignment:
Q  83 ctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||| ||||||||||  |||| |||||||  ||||||| ||||||||||||||||    
T  34877997 ctggtattccccgaatacgtccttggaaggtgctccttgccactgaagcccaaacaacttggtt 34877934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 50503407 - 50503498
Alignment:
Q  28 ctcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctcct 119  Q
    ||||| ||||||  |||||| |||||||||   ||||||||||||  ||| ||| | | |||||||||||||||||||| ||||||||||||    
T  50503407 ctcgtgcgtagaggcatgcgcactggtcaagtgttgttccccctgggaatcgaacccgatattccccggatacgtccttgaaaggagctcct 50503498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 5144214 - 5144296
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    |||||| |||||||||||||||| | ||||| || ||||||| ||| |||||||||  ||| || |||| |||||||||||||    
T  5144214 ttgttctccctgaaaattgaatccgatattctccagatacgttcttgaaaggagcttattaccattgaagcccaaacaacttg 5144296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 40288511 - 40288641
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  |||||  |||||  ||||| |||||| ||| | |||||||||||| |||| ||| | ||||||||||| ||||||||||  || ||||    
T  40288511 cgactaatccggctcgtgtgtagaggcatgcatactggccaaccgttgttccccctggaaatcgaacccggtattccccgaatacgtccttggaaagagc 40288610  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    |||||  ||||  | ||||| ||||||||||    
T  40288611 tccttgccactcgagcccaagcaacttggtt 40288641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 13262160 - 13262079
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattcccc 94  Q
    ||||||||||||| |||||| |||||| ||||||||| ||  ||||| |||||| ||||| |||| ||| | ||||||||||    
T  13262160 ggacgactaatccgactcgtgcgtagagacatgcgtattgaccaaacgttgttctccctggaaatcgaacccggtattcccc 13262079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 10173064 - 10173132
Alignment:
Q  75 aattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    ||||||||| |||||||||| |||||||||||  ||||||| ||||  ||||| | |||||||||||||    
T  10173064 aattgaatccggtattccccagatacgtccttggaaggagcaccttgccactggagcccaaacaacttg 10173132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 43959846 - 43959981
Alignment:
Q  7 aaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcctt 106  Q
    ||||| || ||||||||||  ||||| ||||||  |||||| ||||| ||| | ||||||||||||  ||||||| | | |||||||||| |||||| ||    
T  43959846 aaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctgggaattgaacccgatattccccgggtacgtcatt 43959945  T
Q  107 aaaaggagctccttatcactgaaacccaaacaactt 142  Q
      ||||||| ||||  ||||| | ||||| ||||||    
T  43959946 ggaaggagcaccttgccactggagcccaatcaactt 43959981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 2567353 - 2567223
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    ||||| ||||||  ||||||  |||||  |||||| ||||| ||| | |||||  ||| |||||| ||| | ||||||| ||| ||||||||||  ||||    
T  2567353 ggacggctaatctgactcgtgagtagaggcatgcgcactggccaagcgttgttttccccgaaaatcgaacccggtattctccgaatacgtccttggaagg 2567254  T
Q  113 agctccttatcactgaaacccaaacaacttg 143  Q
    ||||||||  || |||| |||||||||||||    
T  2567253 agctccttgccagtgaagcccaaacaacttg 2567223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 45361942 - 45362036
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaa 136  Q
    |||||| ||||| ||| | ||||||| ||||| ||| ||| | ||||||||| || |||||||||  ||||||||||||  ||||||| ||||||    
T  45361942 catgcgcactggccaagcgttgttcctcctgagaatcgaacccggtattcccagggtacgtccttggaaggagctccttgccactgaagcccaaa 45362036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 2980962 - 2981095
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    ||||||||||||| |||||| ||||||  |||||  ||||| |||   |||||||| |||  ||| ||| |  ||||||||||||||||||| |  ||||    
T  2980962 ggacgactaatccgactcgtgcgtagaggcatgcacactggccaagtgttgttcccgctgggaatcgaacccagtattccccggatacgtccctggaagg 2981061  T
Q  113 agctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||  ||||  | ||||| ||||||||||    
T  2981062 agctccttgccactagagcccaagcaacttggtt 2981095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 8764068 - 8763935
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||  ||||| ||||||  |||||| ||||| |||   ||||||||||||  ||  ||| | | |||||||||| |||||||||  ||||    
T  8764068 ggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaaacgaacccgatattccccgggtacgtccttggaagg 8763969  T
Q  113 agctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||  ||| | | ||||| ||||||||||    
T  8763968 agctccttgccacgggagcccaagcaacttggtt 8763935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 11397908 - 11398052
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| ||||||||||||| |||| | ||||||  ||| || | ||| ||||| |||||||||  | || | ||| | ||||||| ||||||||    
T  11397908 cccaccaaaggtggacgactaatccgactcatgcgtagaggcatacgcattggccaaacgttgttcccctcggaa-tcgaacccggtattctccggatac 11398006  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
     |||||  ||||||||||||  ||||| | ||||| ||||||||||    
T  11398007 atccttggaaggagctccttgccactggagcccaagcaacttggtt 11398052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 16263593 - 16263524
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaag 111  Q
    |||||| ||||| ||| | ||||||| |||| |||| ||| |||||||||||| ||||||||||| ||||    
T  16263593 catgcgcactggccaagcgttgttcctcctggaaatcgaacctggtattccccagatacgtccttgaaag 16263524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 26258717 - 26258640
Alignment:
Q  69 cctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||| ||| ||||| |||||||||||| |||||| ||  |||||||||||||  |||  || |||||||||||||||    
T  26258717 cctgagaatcgaatccggtattccccgggtacgtctttggaaggagctccttactacttgaatccaaacaacttggtt 26258640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 32151001 - 32151082
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaactt 142  Q
    |||||||||||| |||| ||| ||| |||||| || | ||||||||  ||||||||||||  ||||| | ||||||||||||    
T  32151001 ttgttccccctggaaatcgaacctgatattcctcgaaaacgtccttggaaggagctccttgccactggagcccaaacaactt 32151082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 40226357 - 40226406
Alignment:
Q  97 atacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||  ||||||||||||  ||||||||||||| ||||||||||    
T  40226357 atacgtccttggaaggagctccttgccactgaaacccaatcaacttggtt 40226406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 18808313 - 18808209
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||||||| | |||||||| |||| ||||||| ||| ||||||   |||||||||||  ||| | ||| ||  ||||| | |||||||||||    
T  18808313 catgcgcactggtcaagcgttgttccctctgagaattgaacctgttattccttagatacgtccttggaagaaactcattgccactggagcccaaacaact 18808214  T
Q  142 tggtt 146  Q
    |||||    
T  18808213 tggtt 18808209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 31576624 - 31576712
Alignment:
Q  59 cattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggttc 147  Q
    ||||||| ||||||| ||| ||| | ||||||  | ||||||||||||| || |||||||||  ||||  | |||||||||||||||||    
T  31576624 cattgtttcccctgagaatcgaacccggtattttcgggatacgtccttagaatgagctccttgccactagagcccaaacaacttggttc 31576712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 12606517 - 12606406
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| || ||||||||||  ||||| ||||||  |||||| ||||| ||||| |||||||||||| |||| |||||||||||||||||||||||| ||    
T  12606517 caaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttccccctggaaatcgaatctggtattccccggatacgttct 12606418  T
Q  106 taaaaggagctc 117  Q
    |  |||||||||    
T  12606417 tggaaggagctc 12606406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 2271321 - 2271464
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||||| |||||||||||||  ||||| |||||| ||||||| |||||  || | |||||| |  ||| ||| ||| | ||||||||||| ||||    
T  2271321 cccatcaaaggtggacgactaatccggctcgtgcgtagagacatgcgcactggctaagcgttgttctc--tgagaatcgaacccggtattccccgaatac 2271418  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  ||||| | ||||| ||||||||||    
T  2271419 gtccttggaaggagctccttgccactggagcccaagcaacttggtt 2271464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 4596171 - 4596106
Alignment:
Q  55 caaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctcctt 120  Q
    ||||| ||||||||||||||||| ||| ||| ||||||||| |||||||||| |||||||||||||    
T  4596171 caaacgttgttccccctgaaaatcgaacctgatattccccgaatacgtccttgaaaggagctcctt 4596106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 9179759 - 9179899
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| |||||||||||||| ||| | ||||||   |||| ||||||||||   ||||||||||||  ||| ||| | ||||||||| || ||||||||    
T  9179759 caaaggtggacgactaatccagctcatgcgtagaggtatgcatactggtcaagtgttgttccccctgggaatcgaacccggtattccctgggtacgtcct 9179858  T
Q  106 taaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |  || |||||||||  ||||| | ||||||||||||||||    
T  9179859 tggaatgagctccttgccactggagcccaaacaacttggtt 9179899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 10311502 - 10311606
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||| ||||||| |||||| ||||||| ||||| ||| | ||||||||| |||  || ||| | |||||||||||||||||| |||  |||||||    
T  10311502 cgactaatctaactcgtgcgtagagacatgcgcactggccaagcgttgttccccttgaggatcgaacccggtattccccggatacgttcttggaaggagc 10311601  T
Q  116 tcctt 120  Q
    |||||    
T  10311602 tcctt 10311606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 24671885 - 24672029
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacg 101  Q
    ||||||||||||||| ||||||||  || || ||||||  |||||  |||||||||   |||||||| |||  ||| ||| | ||||||| || ||||||    
T  24671885 ccatcaaaggcggactactaatccggcttgtgcgtagaggcatgcacactggtcaagtgttgttccctctgggaatagaacccggtattctccagatacg 24671984  T
Q  102 tccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||| |||||||||||||  ||||| | ||||| ||||||||||    
T  24671985 tccttgaaaggagctccttgccactggagcccaagcaacttggtt 24672029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 21898726 - 21898595
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||||||||||  ||| | ||||||  |||||| ||||| ||| | ||||||| ||||  ||| ||| | ||||||||||||||||||||||  ||||||    
T  21898726 acgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgtccttggaaggag 21898627  T
Q  115 ctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||| | ||||| ||||||||||    
T  21898626 ctccttgccactggagcccaagcaacttggtt 21898595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 34954637 - 34954756
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||||| ||||||||||||   ||| | ||||||   ||| | ||||| ||||| ||||||||||||| ||| ||| |||||||||||| | |||    
T  34954637 cccatcaaaggtggacgactaatctggctcatgcgtagaggtatgtgcactggccaaacgttgttccccctgagaatcgaacctggtattccccaggtac 34954736  T
Q  101 gtccttaaaaggagctcctt 120  Q
    ||||||  ||||||||||||    
T  34954737 gtccttggaaggagctcctt 34954756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 6606175 - 6606260
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||| ||| ||| | ||||||||||||||||||||||  ||||||||||||  |||||   ||||| ||||||||||    
T  6606175 ttgttccccctgagaatcgaacccggtattccccggatacgtccttggaaggagctccttgccactgtggcccaagcaacttggtt 6606260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8938803 - 8938658
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||||| ||||||||||| |  ||| | ||||||  | |||| |||||||||   ||||||| ||||  ||| ||| |  ||||||||||||||     
T  8938803 cccatcaaaggtggacgactaattcggctcatgcgtagatgcttgcgcactggtcaagtgttgttcctcctgggaatcgaaccaagtattccccggatat 8938704  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||| ||  |||||||||||| |||||| | ||||||||||||||||    
T  8938703 gtctttggaaggagctccttgtcactggagcccaaacaacttggtt 8938658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 8888973 - 8888865
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacg 101  Q
    |||||||||| ||||||||||||| |||| | ||||||   ||||| ||||| ||||| ||||| ||| | ||||| ||||  | ||||||| |||||||    
T  8888973 ccatcaaaggtggacgactaatccgactcatgcgtagaggtatgcgcactggccaaacgttgtttcccttaaaaatcgaattcgatattccctggatacg 8888874  T
Q  102 tccttaaaa 110  Q
    |||||||||    
T  8888873 tccttaaaa 8888865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 13468965 - 13468906
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctcctt 120  Q
    |||||||||||   ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  13468965 ttgttccccctaggaattgaacctggtattccccggatacgtccttggaaggagctcctt 13468906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 13036082 - 13036164
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    ||||||||||||||||| ||| | | ||||||||| ||||||||||  ||||||||||||  ||||| | ||||| |||||||    
T  13036082 ttgttccccctgaaaatcgaacccgatattccccgaatacgtccttggaaggagctccttgccactggagcccaagcaacttg 13036164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 14107391 - 14107521
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||| | ||||||  |||| | ||||||||| | ||||||| ||||  ||| ||| | ||||||||||| ||||||| ||  |||||||    
T  14107391 cgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgttgttcctcctgggaatcgaacccggtattccccgaatacgtctttggaaggagc 14107490  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    |||||  ||||| | ||||||||||||||||    
T  14107491 tccttgccactggagcccaaacaacttggtt 14107521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 19089590 - 19089444
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| ||||||  ||||||||||||  ||||| ||||||  |||||  ||||| |||   ||||||||||||  |||  || |||||||||| |||||||    
T  19089590 cccaccaaaggtagacgactaatccggctcgtgcgtagaggcatgctcactggccaagtgttgttccccctgggaatcaaacctggtattcctcggatac 19089491  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggttc 147  Q
    |||||| ||| |||||||||   |||| | ||||| |||||||||||    
T  19089490 gtccttgaaatgagctccttgcgactggagcccaagcaacttggttc 19089444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 8611992 - 8612137
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || ||||||||||   || | ||||||| |||||  ||||||||| | ||||||| |||   ||| ||| | |||||||||||| |||    
T  8611992 cccaccaaaggtgggcgactaatccggttcatgcgtagaagcatgcacactggtcaagcgttgttcctcctcggaatcgaacccggtattccccgggtac 8612091  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  ||||| |  |||||||||||||||    
T  8612092 gtccttggaaggagctccttgccactggagtccaaacaacttggtt 8612137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21872995 - 21872959
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgta 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  21872995 cccatcaaaggtggacgactaatccaactcgtacgta 21872959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 19230591 - 19230720
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||||||||||  ||||| ||||||  ||||| |||||  ||| | ||||||||  ||||||| ||||| |||||||||  | |||||||||  ||||||    
T  19230591 acgactaatccggctcgtgcgtagaggcatgcatactgaccaagcgttgttccct-tgaaaatcgaatccggtattcccgag-tacgtccttggaaggag 19230688  T
Q  115 ctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||| | ||||||||||||||||    
T  19230689 ctccttgccactggagcccaaacaacttggtt 19230720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 32048489 - 32048402
Alignment:
Q  55 caaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaactt 142  Q
    ||||| |||||| |||||||||| ||||||| |||||| ||  ||| |||||  ||||||||||||| ||||| |  |||||||||||    
T  32048489 caaacgttgttctccctgaaaatcgaatctgatattcctcgagtacatccttggaaggagctccttaccactggagtccaaacaactt 32048402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 3601176 - 3601075
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||  |||||  ||| |  |||||| ||||| ||| | ||||||||||||| ||| ||| | ||||||||||| ||||    
T  3601176 cccaccaaaggtggacgactaatccggctcgtgtgtataggcatgcgcactggccaagcgttgttccccctgagaatcgaaaccggtattccccgaatac 3601077  T
Q  101 gt 102  Q
    ||    
T  3601076 gt 3601075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 5253301 - 5253386
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||  ||| ||| | |||||||||||| |||||||||  ||||||||||||  || || | ||||| ||||||||||    
T  5253301 ttgttccccctgggaatcgaacccggtattccccgggtacgtccttggaaggagctccttgccattggagcccaagcaacttggtt 5253386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 29333198 - 29333301
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||| ||||| ||||||||| || |||| ||| | ||||||||| || |||||||||  ||||||||| ||  ||||  | |||||||||||    
T  29333198 catgcgcactggccaaacgttgttcccc-tggaaatcgaacccggtattccctgggtacgtccttggaaggagctcattgccactagagcccaaacaact 29333296  T
Q  142 tggtt 146  Q
    |||||    
T  29333297 tggtt 29333301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 21149808 - 21149718
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcctt 106  Q
    ||||||||||||||||| ||||||  |||||| ||||||||||| ||||||||||||||||| ||| |||||||||| |  ||||||||||    
T  21149808 cgactaatccaactcgtgcgtagagtcatgcgcactggtcaaacgttgttccccctgaaaatcgaacctggtattcctcaaatacgtcctt 21149718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 41163484 - 41163622
Alignment:
Q  7 aaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcctt 106  Q
    ||||| |||||||||||||| ||| | |||||| ||||| | ||||| ||||| ||||||||| ||  ||| ||| | |||||||||||| ||||| |||    
T  41163484 aaaggtggacgactaatccagctcatgcgtagagacatgtgcactggccaaacgttgttcccc-tgggaatcgaacccggtattccccgggtacgttctt 41163582  T
Q  107 aaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
      ||||||||||||  ||||| | ||||||||||||||||    
T  41163583 ggaaggagctccttgccactggagcccaaacaacttggtt 41163622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 30349661 - 30349523
Alignment:
Q  8 aaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcctta 107  Q
    |||| ||||||||||| || ||| | | ||||  |||||| ||||| ||| |||||||||||||  ||||  || | ||||||||||||||||||||||     
T  30349661 aaggtggacgactaattcagctcatgcatagaggcatgcgcactggccaatcattgttccccctagaaatcaaacccggtattccccggatacgtccttg 30349562  T
Q  108 aaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
     ||||| ||||||  ||||| | ||||||||||||||||    
T  30349561 gaaggaactccttgccactggagcccaaacaacttggtt 30349523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 25467480 - 25467383
Alignment:
Q  20 taatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctc 117  Q
    ||||||| ||||| ||||||  |||||||||||| ||| | ||||||| ||||||||| |||||| |||||||  | ||||||||||| |||||||||    
T  25467480 taatccagctcgtgcgtagaggcatgcgtactggccaatcgttgttcctcctgaaaatcgaatctagtattccttgtatacgtccttagaaggagctc 25467383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 42086416 - 42086271
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||  ||| | ||||||  |||||| ||||||||| | ||||||||||||  ||| ||| | |||||||| ||| |||    
T  42086416 cccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatcgaacccggtattcctcgggtac 42086317  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  ||| | | ||||| ||||||||||    
T  42086316 gtccttggaaggagctccttgccaccggagcccaagcaacttggtt 42086271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 14588640 - 14588754
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| |||||||||||||  ||| | ||||||  |||||| ||||||||| | || |||| ||||||||| ||| | | |||||||| ||||||||||    
T  14588640 caaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttattcctcctgaaaatcgaacccgatattccccagatacgtcct 14588739  T
Q  106 taaaaggagctcctt 120  Q
    | |||| ||||||||    
T  14588740 tgaaagaagctcctt 14588754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 12081992 - 12081892
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| ||||||||||| |  ||||| ||||||  |||||| ||||| ||| | ||||||||||||| ||| ||| |  ||||||||||||||||||||    
T  12081992 caaaggtggacgactaattcggctcgtgcgtagatgcatgcgcactggccaagcgttgttccccctgagaatcgaacccagtattccccggatacgtcct 12081893  T
Q  106 t 106  Q
    |    
T  12081892 t 12081892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 19572799 - 19572667
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||||||||||  ||| | ||||||  |||||| ||||| |||   ||||||||||||  |||  || | ||||||||||||||||||||||  ||||||    
T  19572799 acgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatctaacccggtattccccggatacgtccttggaaggag 19572700  T
Q  115 ctccttatcactgaaacccaaacaacttggttc 147  Q
    ||||||  ||||| | ||||| |||||||||||    
T  19572699 ctccttgccactggagcccaagcaacttggttc 19572667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 5731952 - 5732083
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    ||||||||||   ||| ||||||||  |||||| ||||| ||| | ||||||| ||||  ||| ||| | |||||||||||| |||||||||  ||||||    
T  5731952 acgactaatctggctcatacgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgggtacgtccttggaaggag 5732051  T
Q  115 ctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||| | ||||| ||||||||||    
T  5732052 ctccttgccactggagcccaagcaacttggtt 5732083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 37263323 - 37263185
Alignment:
Q  7 aaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcctt 106  Q
    ||||| |||||||||||||  ||||| ||||||  |||||| | ||| ||| | ||||| ||||||| ||| ||| | | |||||||||| |||||||||    
T  37263323 aaaggtggacgactaatccggctcgtgcgtagaggcatgcgcattggccaagcgttgtt-cccctgagaatcgaacccgatattccccgggtacgtcctt 37263225  T
Q  107 aaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    | ||||| ||||||  ||||| | ||||| ||||||||||    
T  37263224 agaaggaactccttgccactggagcccaagcaacttggtt 37263185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 24875434 - 24875364
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccct 71  Q
    ||||||||||| |||||| ||||||  ||||| |||||| ||||||| ||||||||||| |||||| ||||    
T  24875434 cccatcaaaggtggacgattaatccggctcgtgcgtagagacatgcgcactggtcaaacgttgttctccct 24875364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 35245057 - 35245143
Alignment:
Q  34 cgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctcctt 120  Q
    ||||||| |||||  ||||||||||| |||||||| ||||||||||||     |||||| |||||| ||||||| ||||||||||||    
T  35245057 cgtagaagcatgcacactggtcaaacgttgttccctctgaaaattgaactcaatattcctcggatatgtccttagaaggagctcctt 35245143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 1538460 - 1538375
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||  ||| ||| | ||||||||||| |||||||||   ||||||||||||  ||||| | ||||||||||||||||    
T  1538460 ttgttccccctgggaatcgaacccggtattccccgaatacgtcctcggaaggagctccttgccactggagcccaaacaacttggtt 1538375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 12705103 - 12704958
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || ||||||||||   || | ||||||| |||||  ||||||||| | ||||||| |||   ||| ||| | |||||||||||| |||    
T  12705103 cccaccaaaggtgggcgactaatccggttcatgcgtagaagcatgcacactggtcaagcgttgttcctcctcggaatcgaacccggtattccccgggtac 12705004  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  ||||| |  |||||||||||||||    
T  12705003 gtccttggaaggagctccttgccactggagtccaaacaacttggtt 12704958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 18136358 - 18136443
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||  ||| ||| | ||||||| ||||||||||| ||  ||||||||||||  ||||| | ||||||||||||||||    
T  18136358 ttgttccccctgggaatcgaacccggtattctccggatacgtctttggaaggagctccttgccactggagcccaaacaacttggtt 18136443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 25417217 - 25417345
Alignment:
Q  17 gactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagct 116  Q
    |||||||||  ||||| ||||||  |||||| ||||| ||| | ||||||||||||  ||| ||| | |||||||||||  |||||||||  ||||||||    
T  25417217 gactaatccggctcgttcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacccggtattccccgagtacgtccttggaaggagct 25417316  T
Q  117 ccttatcactgaaacccaaacaacttggtt 146  Q
    ||||  ||||| | |||||| |||||||||    
T  25417317 ccttgccactggagcccaaa-aacttggtt 25417345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 41801066 - 41800925
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||||  | |||||||||||  ||||| |||||| ||||||| | ||||||| | ||||||||| ||| ||| ||| | | |||||||| |||||    
T  41801066 cccatcaaagatgaacgactaatccggctcgtgcgtagagacatgcgcattggtcaagcgttgttccccttgagaatcgaacccgatattccccagatac 41800967  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaactt 142  Q
    ||| || ||||||  |||||| ||| | |  |||||||||||    
T  41800966 gtcattgaaaggaattccttaccacgggagtccaaacaactt 41800925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 20682641 - 20682781
Alignment:
Q  7 aaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcctt 106  Q
    ||||| || ||| ||||||  ||||| ||||||  |||||| ||||| ||| | |||||||||||| ||||  || |   |||||||||| |||||||||    
T  20682641 aaaggtggtcgattaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatctaacccaatattccccgggtacgtcctt 20682740  T
Q  107 a-aaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    | || |||||||||| |||||| | ||||| ||||||||||    
T  20682741 agaatggagctccttgtcactggagcccaagcaacttggtt 20682781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 24500092 - 24500140
Alignment:
Q  98 tacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||| || ||||||||| |||||||| ||||||||||||||||    
T  24500092 tacgtccttagaatgagctccttgtcactgaagcccaaacaacttggtt 24500140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 8513608 - 8513489
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| ||||||||||||   ||||| ||||||  |||| | ||||| ||| ||||||| |||||   ||| ||| | |||||||||||| |||    
T  8513608 cccaccaaaggtggacgactaatctggctcgtgcgtagaggcatgtgcactggccaagcattgtttcccctaggaatcgaacccggtattccccgggtac 8513509  T
Q  101 gtccttaaaaggagctcctt 120  Q
    ||||||  ||||||||||||    
T  8513508 gtccttggaaggagctcctt 8513489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 13664289 - 13664230
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctcctt 120  Q
    ||||||||||||| ||| ||||| |||||||||  |||||||||||  ||||||||||||    
T  13664289 ttgttccccctgataatcgaatccggtattccctagatacgtccttggaaggagctcctt 13664230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 20525841 - 20525782
Alignment:
Q  87 tattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||||| ||||| |||||||||||||  ||||| | ||||| ||||||||||    
T  20525841 tattccccggatacatccttgaaaggagctccttgccactggagcccaagcaacttggtt 20525782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 18262637 - 18262731
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccgg 96  Q
    |||||| ||| || ||||||||||  |||||  |||||   ||||| ||||||||| | ||||||||||||||||| ||| | ||||||||||||    
T  18262637 ccatcagaggtgggcgactaatccggctcgtgtgtagaggtatgcgcactggtcaagcgttgttccccctgaaaatagaacccggtattccccgg 18262731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 19839401 - 19839327
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtatt 90  Q
    |||||||||  ||||||| |||||  |||||| |||| |||| | ||||||| ||||||||||||||| ||||||    
T  19839401 cgactaatctgactcgtatgtagaggcatgcgcactgatcaagcgttgttcctcctgaaaattgaatccggtatt 19839327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 21375439 - 21375373
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccc 68  Q
    |||||||||  ||||||||||||| |||| | ||||||| |||||| ||||||||||  ||||||||    
T  21375439 ccatcaaagatggacgactaatccgactcatgcgtagaagcatgcgcactggtcaaatgttgttccc 21375373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 26077203 - 26077085
Alignment:
Q  28 ctcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactg 127  Q
    ||||| ||||||  |||| | ||||| ||| | |||||||| |||  ||| ||| || |||||||||  ||||||||||  || |||||||||| |||||    
T  26077203 ctcgtgcgtagaggcatgtgcactggccaagcgttgttccctctgggaatcgaacctagtattccccaaatacgtccttggaatgagctccttaccactg 26077104  T
Q  128 aaacccaaacaacttggtt 146  Q
     | ||||||||||||||||    
T  26077103 gagcccaaacaacttggtt 26077085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 30995195 - 30995065
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||||| ||||||  ||||||  |||| |||   ||||||||||||  ||| ||| ||||||||||||   |||||||||  |||||||    
T  30995195 cgactaatccggctcgtgcgtagaggcatgcgccctggccaagtgttgttccccctgggaatcgaacctggtattccccatgtacgtccttggaaggagc 30995096  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    |||||  |||| |||||||  ||||||||||    
T  30995095 tccttgccactaaaacccaggcaacttggtt 30995065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 35813020 - 35813158
Alignment:
Q  5 tcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcc 104  Q
    ||||||| ||||||||||||| |||| |  ||||| ||||||| ||||||||| |||| || |||||   ||| ||| | |||||||| ||| |||||||    
T  35813020 tcaaaggtggacgactaatccgactcatgtgtagagacatgcgcactggtcaagcattatttcccctaggaatcgaacccggtattcctcgggtacgtcc 35813119  T
Q  105 ttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    ||  || ||||| |||  ||| | | |||||||||||||    
T  35813120 ttggaatgagcttcttgccaccgcagcccaaacaacttg 35813158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 6767153 - 6767214
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||| |||||||||  ||||||||||||  ||||| | ||||| ||||||||||    
T  6767153 ggtattccccgggtacgtccttggaaggagctccttgccactggagcccaagcaacttggtt 6767214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 9812877 - 9812816
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||| |||||||||  ||||||||||||  ||||| |  |||||||||||||||    
T  9812877 ggtattccccgggtacgtccttggaaggagctccttgccactggagtccaaacaacttggtt 9812816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 12766172 - 12766075
Alignment:
Q  49 actggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||| ||| ||||||||| ||| | ||| ||| | |||||||||||| |||||||||  ||||||||||||  ||||  |  |||||||||||||||    
T  12766172 actggccaagcattgttcctcctcagaatcgaacccggtattccccgggtacgtccttggaaggagctccttgccactcgagtccaaacaacttggtt 12766075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 23247370 - 23247511
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacg 101  Q
    |||||||||| ||||||||||||   ||||| ||||||  ||||| ||||| |||| | ||||||| ||||  ||| ||| | | |||||||| | ||||    
T  23247370 ccatcaaaggtggacgactaatctggctcgtgcgtagaggcatgcatactgatcaagcgttgttcctcctgggaatcgaacccgatattccccaggtacg 23247469  T
Q  102 tccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    |||||  || |||||||||   ||||||  ||||||||||||    
T  23247470 tccttggaatgagctccttgctactgaagtccaaacaacttg 23247511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 25950660 - 25950741
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaactt 142  Q
    ||||| ||| |||||||  || ||| |||||||||  |||||||||  ||||||||||||| ||||| | ||||||||||||    
T  25950660 ttgtttcccttgaaaatcaaacctgatattccccgagtacgtcctttgaaggagctccttaccactggagcccaaacaactt 25950741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 28857157 - 28857072
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||  ||| ||| | |||||||||||| | |||||||  ||||||||||||  ||||| | ||||| ||||||||||    
T  28857157 ttgttccccctgggaatcgaacccggtattccccgggtgcgtccttggaaggagctccttgccactggagcccaagcaacttggtt 28857072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 35403558 - 35403675
Alignment:
Q  29 tcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactga 128  Q
    |||| |||||| ||||||| | ||| ||| | ||||||||||| | ||| ||| | |||||| ||||  |||||||||  ||||||||||||  |||||     
T  35403558 tcgtgcgtagagacatgcgcattggccaagcgttgttcccccttagaatcgaacccggtatttcccgagtacgtccttggaaggagctccttgccactgg 35403657  T
Q  129 aacccaaacaacttggtt 146  Q
    | ||||||||| ||||||    
T  35403658 agcccaaacaagttggtt 35403675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 39728416 - 39728331
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||| || |||| ||| ||| |||||||||||||| ||||| |||  || |||||||||  ||||| | ||||||||||||||||    
T  39728416 ttgtttcctctgataatcgaacctggtattccccgggtacgttcttggaaagagctccttgccactggagcccaaacaacttggtt 39728331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 1899049 - 1898953
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaaca 138  Q
    |||||| ||||| ||| | ||||||||||||  ||| ||| | |||||||||||| ||| |||||  ||||||||||||  ||||| | ||||||||    
T  1899049 catgcgcactggccaagcgttgttccccctgggaatcgaacccggtattccccgggtacatccttggaaggagctccttgccactgtagcccaaaca 1898953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 5079415 - 5079275
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| || ||||||||||  ||||| ||||||| |||||| | ||  ||| |  ||||||||||| ||||  |  | |||||||| ||||||||| ||    
T  5079415 caaaggtgggcgactaatccggctcgtgcgtagaagcatgcgcattgaccaagcgctgttccccctggaaatcaaccccggtattccacggatacgtgct 5079316  T
Q  106 taaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |  ||||||||| ||  ||| | ||||||||||||||||||    
T  5079315 tggaaggagctctttgccaccggaacccaaacaacttggtt 5079275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 9936 - 9791
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||  ||||| ||||||  |||||| ||||| ||| | |||||||||||| |||| ||||| |||||||| | |||||    
T  9936 cccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaatccggtattcctcagatac 9837  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
     |||||  |||||||||||| |||||| |  | |||||||||||||    
T  9836 atccttggaaggagctccttgtcactggagtcaaaacaacttggtt 9791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 5472866 - 5473007
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || ||||||||||  ||||| ||||||  |||||| ||||| ||| | ||||| ||||||| |||  || ||||||||||||||||||    
T  5472866 cccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatcaaacctggtattccccggatac 5472965  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaactt 142  Q
    |||||| ||| |||||||||  ||||| | ||||||||||||    
T  5472966 gtccttgaaatgagctccttgccactggagcccaaacaactt 5473007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 47078536 - 47078406
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||||| ||||||  |||| | ||||| ||| | ||||||||||||  ||| ||| | |||||||||||| |||||||||  |||||||    
T  47078536 cgactaatccggctcgtgcgtagaggcatgtgcactggccaagcgttgttccccctgggaatcgaacccggtattccccgggtacgtccttggaaggagc 47078437  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    |||||  ||||| ||||||| ||||||||||    
T  47078436 tccttgccactggaacccaagcaacttggtt 47078406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 1446907 - 1446774
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||  ||| | ||||||  |||||| ||||| |||   ||||||||||||  ||| ||| | ||||||||||||||||||||||  ||||    
T  1446907 ggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtccttggaagg 1446808  T
Q  113 agctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||  ||||| | ||||| ||||||||||    
T  1446807 agctccttgccactggagcccaagcaacttggtt 1446774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 29895868 - 29895735
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||  ||| | ||||||  |||||| ||||| |||   ||||||||||||  ||| ||| | ||||||||||||||||||||||  ||||    
T  29895868 ggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtccttggaagg 29895769  T
Q  113 agctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||  ||||| | ||||| ||||||||||    
T  29895768 agctccttgccactggagcccaagcaacttggtt 29895735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 38166120 - 38165975
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || ||||||||||  ||||| ||||||  |||||| ||||| ||| | ||||||||||||  |||  || |  |||||||||||||||    
T  38166120 cccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgttgttccccctgggaatccaacccagtattccccggatac 38166021  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  || || | ||||||||||||||||    
T  38166020 gtccttggaaggagctccttgccagtggagcccaaacaacttggtt 38165975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 14859382 - 14859302
Alignment:
Q  3 catcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatc 83  Q
    ||||||||| ||| ||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| |||||    
T  14859382 catcaaaggtggatgactaatctggctcgtgcgtagagacatgcgcactggtcaaacattgttcctcctgaaaatcgaatc 14859302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 20128390 - 20128283
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||| | ||||| |||| |  |||||| ||||| ||| ||||||||||||||| ||| ||| |  |||||||||||||||||||||  ||||    
T  20128390 ggacgactaatctagctcgtgcgtaaaggcatgcgcactggccaagcattgttccccctgagaatcgaacccagtattccccggatacgtccttggaagg 20128291  T
Q  113 agctcctt 120  Q
    | ||||||    
T  20128290 aactcctt 20128283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2559400 - 2559255
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||| ||||||  || || ||||||  |||||| ||||| ||| | ||||||| |||  |||| ||||| |||||||||| | |||    
T  2559400 cccaccaaaggtggacgagtaatccggcttgtgcgtagaggcatgcgcactggccaagcgttgttcctcctagaaatcgaatccggtattccccaggtac 2559301  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||| ||  ||||| | ||||||||||||||||    
T  2559300 gtccttggaaggagctcgttgccactggagcccaaacaacttggtt 2559255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8889115 - 8888970
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||  ||| | ||||||  |||||| ||||  |||   |||||||||||   ||| ||| | ||||||||||||||||    
T  8889115 cccaccaaaggtggacgactaatccggctcatgcgtagagccatgcgcactgcccaagtgttgttccccctaggaatcgaacccggtattccccggatac 8889016  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||| ||||||||||||  | ||  | ||||||||||||||||    
T  8889015 gtccttagaaggagctccttgccgctagagcccaaacaacttggtt 8888970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 24850664 - 24850772
Alignment:
Q  20 taatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctcct 119  Q
    ||||||| ||| | ||||||  |||||| |||||||||   ||||||||| ||| |||||||||||||||| |||||||||||||||  || ||||||||    
T  24850664 taatccagctcatgcgtagaggcatgcgcactggtcaagtgttgttcccc-tgataattgaatctggtatttcccggatacgtccttggaatgagctcct 24850762  T
Q  120 tatcactgaa 129  Q
    |  |||||||    
T  24850763 tgccactgaa 24850772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 30317326 - 30317197
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || |||||||| |  ||||| ||||||  ||| |||||||| ||| | |||||||| |||| ||| ||| ||| |||||||||  |||    
T  30317326 cccaccaaaggtgggcgactaattcggctcgtgcgtagaggcattcgtactggccaagcgttgttccctctgagaatcgaacctgatattccccgagtac 30317227  T
Q  101 gtccttaaaaggagctccttatcactgaaa 130  Q
    ||||||||||||| ||||||  ||||||||    
T  30317226 gtccttaaaaggaactccttgccactgaaa 30317197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 33647766 - 33647669
Alignment:
Q  49 actggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||| | |||||| ||||| |||| ||| | |||||||||| ||||||||||| |||||||||||||  ||||  | ||||| ||||||||||    
T  33647766 actggtcaagcgttgttctccctggaaatcgaacccggtattccccagatacgtccttgaaaggagctccttgccactagagcccaagcaacttggtt 33647669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 49260683 - 49260828
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || ||||||||||  ||||| ||||||  |||||| ||||| ||| | ||||||||| ||  ||||||||   |||||||||||||||    
T  49260683 cccaccaaaggtggtcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccttgggaattgaattcagtattccccggatac 49260782  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
     |||||  |||||| |||||  || ||||| |||| ||||||||||    
T  49260783 atccttggaaggagttccttgccattgaaatccaagcaacttggtt 49260828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 53599112 - 53599008
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||| ||||| ||||||| ||||  ||| ||| | |||||||||||| |||||||||  ||||||||||||  || || | |||||||||||    
T  53599112 catgcgcactggccaaacgttgttcctcctgggaatcgaacccggtattccccgggtacgtccttggaaggagctccttgccaatggagcccaaacaact 53599013  T
Q  142 tggtt 146  Q
    |||||    
T  53599012 tggtt 53599008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 15829706 - 15829647
Alignment:
Q  87 tattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||| |||||||||||||| |||| |||||||| |||||| | ||||||||||||||||    
T  15829706 tattctccggatacgtccttgaaagaagctccttgtcactggagcccaaacaacttggtt 15829647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 31588691 - 31588632
Alignment:
Q  87 tattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||| ||||||||||| || |||||||||  ||||||| ||||||||||||||||    
T  31588691 tattccccgaatacgtccttagaacgagctccttgacactgaagcccaaacaacttggtt 31588632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 295579 - 295688
Alignment:
Q  29 tcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactga 128  Q
    |||| ||||||  |||||| ||||| ||||| ||||||| | ||  ||| ||||||||||||||||||||||||||||| |||| | |||||  |||||     
T  295579 tcgtgcgtagaggcatgcgcactggccaaacgttgttcctc-tgggaatcgaatctggtattccccggatacgtccttagaaggtgttccttgccactgg 295677  T
Q  129 aacccaaacaa 139  Q
    | |||||||||    
T  295678 agcccaaacaa 295688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 6032726 - 6032800
Alignment:
Q  69 cctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    ||||||||||||| | |||||||||||| |||||||||  ||||||||||||  ||||| | ||||| |||||||    
T  6032726 cctgaaaattgaacccggtattccccgggtacgtccttggaaggagctccttgccactggagcccaagcaacttg 6032800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 37382578 - 37382497
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaactt 142  Q
    |||||| |||||||||||||| ||||||||| | ||||||| | ||  ||||||||||||  ||||| | ||||||||||||    
T  37382578 ttgttctccctgaaaattgaacctggtattcactggatacgacatttgaaggagctccttgccactgtagcccaaacaactt 37382497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 41162984 - 41163045
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||| |||||||||||||||  |||||||||||| |||||| | ||||| ||||||||||    
T  41162984 ggtatttcccggatacgtccttggaaggagctccttgtcactggagcccaagcaacttggtt 41163045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 14568037 - 14567937
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    |||||||||| |||||| ||||||   ||| | ||||||||| | || ||| |||||| ||| ||| ||||||||||||  ||||||||||| |||||||    
T  14568037 cgactaatccgactcgtgcgtagaggtatgtgcactggtcaagcgttattctccctgagaatcgaacctggtattccccaaatacgtccttagaaggagc 14567938  T
Q  116 t 116  Q
    |    
T  14567937 t 14567937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14858803 - 14858747
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaa 57  Q
    ||||||||||| |||||| |||||  ||||||||||||| ||||||| |||||||||    
T  14858803 cccatcaaaggtggacgaataatctgactcgtacgtagagacatgcgcactggtcaa 14858747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21429394 - 21429279
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| ||||||||| ||  |||||| ||||||  |||||| |||||  |||| ||||||||||| ||||| ||| | | |||||| |||||||    
T  21429394 cccaccaaaggtggacgactagtctgactcgtgcgtagaggcatgcgcactggctaaacgttgttccccctaaaaatcgaacccgatattcctcggatac 21429295  T
Q  101 gtccttaaaaggagct 116  Q
    ||| ||  ||||||||    
T  21429294 gtctttggaaggagct 21429279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 43458704 - 43458561
Alignment:
Q  3 catcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgt 102  Q
    ||||||||| |||||||||||||  ||||| ||||||  |||||| ||||| ||| | || |||| ||||  ||| |||||  |||||||||  ||||||    
T  43458704 catcaaaggtggacgactaatccggctcgtccgtagaggcatgcgcactggccaagcgttcttcctcctgggaatcgaatccagtattccccaaatacgt 43458605  T
Q  103 ccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||  || ||||| |||  ||||| | ||||| ||||||||||    
T  43458604 ccttggaatgagcttcttgccactggagcccaagcaacttggtt 43458561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 3574479 - 3574609
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    |||||||||| |||||| ||||||  |||||| ||||| |||   |||||| |||||  |||||||   |||||||||  | |||||||||  |||||||    
T  3574479 cgactaatccgactcgtgcgtagaggcatgcgcactggccaagtgttgttctccctgggaattgaactcggtattccctaggtacgtccttggaaggagc 3574578  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    |||||  ||||| | ||||| ||||||||||    
T  3574579 tccttgccactggagcccaagcaacttggtt 3574609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 17946548 - 17946467
Alignment:
Q  35 gtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctc 117  Q
    |||||| |||||| |||||||||  |||||||||| ||||||| ||||||| ||||||||  |||| |||||  |||||||||    
T  17946548 gtagaagcatgcgcactggtcaagaattgttcccc-tgaaaatcgaatctgctattccccatatacatccttcgaaggagctc 17946467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 40780879 - 40781021
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||  ||| | ||||||  |||||| ||||  ||| | ||||||||| ||| ||| ||| | | ||||  ||| ||||    
T  40780879 cccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagcgttgttccccttgagaatcgaacccgatattttccgaatac 40780978  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    ||||||||||| ||||||||  ||||| | |||| ||||||||    
T  40780979 gtccttaaaagaagctccttgccactggagcccagacaacttg 40781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 45721179 - 45721085
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccg 95  Q
    ||||| ||||| ||||||||||||| ||| || ||||||  || ||| | ||| |||||||| || ||||||||||| ||| | |||||||||||    
T  45721179 cccattaaaggtggacgactaatccgacttgtgcgtagaggcacgcgcagtggccaaacattatttcccctgaaaatggaacccggtattccccg 45721085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 27248437 - 27248376
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||||||||||||  ||||||||| ||  ||||| | ||||| ||||||||||    
T  27248437 ggtattccccggatacgtccttggaaggagctcgttgccactggagcccaagcaacttggtt 27248376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 34667704 - 34667765
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||| |||||||||  ||||||||||||  ||||  | ||||||||||||||||    
T  34667704 ggtattccccgggtacgtccttggaaggagctccttgccactagagcccaaacaacttggtt 34667765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 36145235 - 36145352
Alignment:
Q  3 catcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgt 102  Q
    ||||||||| |||||||||||||  ||| |  |||||  |||||| |||| |||| | ||||| ||||||  ||| ||| | |||||||||||| |||||    
T  36145235 catcaaaggtggacgactaatccggctcatgtgtagaggcatgcgcactgatcaagcgttgtttcccctgggaatcgaacccggtattccccgggtacgt 36145334  T
Q  103 ccttaaaaggagctcctt 120  Q
    ||||  || |||||||||    
T  36145335 ccttggaatgagctcctt 36145352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 55921067 - 55920982
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||  ||| ||| | |||||||||||| | |||||||  ||||||||||||  ||||| | ||||| ||||||||||    
T  55921067 ttgttccccctgggaatcgaacccggtattccccgggtgcgtccttggaaggagctccttgccactggagcccaagcaacttggtt 55920982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 20421806 - 20421727
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||||||||| |||| ||| | | |||||||| |||||||| || |||||||||||||  ||||||| ||||| |||||    
T  20421806 ttgttccccctggaaatcgaaccag-tattccccagatacgtctttgaaaggagctccttgccactgaagcccaagcaact 20421727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 24166542 - 24166398
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacg 101  Q
    |||||||||| ||  ||||||||   ||||| ||||||  |||||| ||||| ||||| ||||| ||| ||  ||| ||| |  ||||||||||  ||||    
T  24166542 ccatcaaaggtgggtgactaatctggctcgtgcgtagaggcatgcgcactggccaaacgttgtttcccttgggaatcgaacccagtattccccgagtacg 24166443  T
Q  102 tccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||  ||||||||||||  ||||| | ||||| ||||||||||    
T  24166442 tccttggaaggagctccttgccactggagcccaatcaacttggtt 24166398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 38075485 - 38075381
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||| ||| | ||||| ||||||| ||| ||| | ||||||| ||| ||||||||||  ||||| ||||||  | ||| | |||||||||||    
T  38075485 catgcgcactggccaagcgttgtttcccctgagaatcgaacccggtattctccgaatacgtccttggaaggaactccttgccgctggagcccaaacaact 38075386  T
Q  142 tggtt 146  Q
    |||||    
T  38075385 tggtt 38075381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 42722609 - 42722713
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||||||||||  ||| | ||||||  |||||| ||||| ||| | ||||||| ||||  ||||||| | |||||| ||||| |||||||||  ||||||    
T  42722609 acgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaattgaacccggtatttcccgggtacgtccttggaaggag 42722708  T
Q  115 ctcct 119  Q
    |||||    
T  42722709 ctcct 42722713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 52950134 - 52950030
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||| ||| | ||||||||||||  ||| ||| | | |||||||| | |||||||||  ||||||||||||  ||||  | |||||||||||    
T  52950134 catgcgcactggccaagcgttgttccccctgggaatcgaacccgatattccccaggtacgtccttggaaggagctccttgccactagagcccaaacaact 52950035  T
Q  142 tggtt 146  Q
    |||||    
T  52950034 tggtt 52950030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 6100523 - 6100419
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||| ||| | ||||||| ||||  ||| ||| | |||||||||||||||||||||| |||||||||||||  ||||||| |||||||||||    
T  6100523 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgtccttgaaaggagctccttgccactgaagcccaaacaact 6100424  T
Q  142 tggtt 146  Q
    |||||    
T  6100423 tggtt 6100419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 33401823 - 33401958
Alignment:
Q  7 aaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcctt 106  Q
    ||||| || |||||||||| |||| | ||||||  |||||  |||||||||   ||||||||||||||||| ||| | |||||||||||  |||||||||    
T  33401823 aaaggtgggcgactaatccgactcatgcgtagaggcatgcacactggtcaagtgttgttccccctgaaaatcgaacccggtattccccgagtacgtcctt 33401922  T
Q  107 aaaaggagctccttatcactgaaacccaaacaactt 142  Q
     |||||||||||||  ||||| | ||||||||||||    
T  33401923 gaaaggagctccttgccactggagcccaaacaactt 33401958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 44893323 - 44893441
Alignment:
Q  28 ctcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactg 127  Q
    ||||| ||||||  |||||  ||||| ||| |||||||||||||  |||||||| | |||||||||||| |||||||||  ||||||||||||  |||||    
T  44893323 ctcgtgcgtagaggcatgcacactggccaagcattgttccccctagaaattgaacccggtattccccgggtacgtccttggaaggagctccttgccactg 44893422  T
Q  128 aaacccaaacaacttggtt 146  Q
     | ||||||||||||||||    
T  44893423 gagcccaaacaacttggtt 44893441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 2467148 - 2467281
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||  ||| | | |||| ||||||| ||||| |||   |||||||||||| |||| ||| | ||||||||||||||||||||||  ||||    
T  2467148 ggacgactaatccggctcatgcatagagacatgcgcactggccaagagttgttccccctggaaatcgaacccggtattccccggatacgtccttggaagg 2467247  T
Q  113 agctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||  ||||| | ||||| ||||||||||    
T  2467248 agctccttgccactggagcccaagcaacttggtt 2467281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 8141182 - 8141049
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    ||||||||||| || ||| | ||||||  |||||| ||||| ||| | ||||| |||||| |||| ||| | ||||||||||| ||||||||||  |||     
T  8141182 ggacgactaattcagctcatgcgtagaggcatgcgcactggccaagcgttgtttcccctggaaatcgaacccggtattccccgaatacgtccttggaagc 8141083  T
Q  113 agctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||  ||||| | ||||||||||||||||    
T  8141082 agctccttgccactggagcccaaacaacttggtt 8141049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 4479314 - 4479455
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||| ||| | ||||||  |||||| ||||| ||| | ||||||||| ||  ||| ||||| |||||||  | | |||    
T  4479314 cccaccaaaggtggacgactaatccagctcatgcgtagaggcatgcgcactggccaagcgttgttcccc-tgggaatcgaatccggtattctacaggtac 4479412  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    |||||| |||||| || |||  |||||||||||||||||||||    
T  4479413 gtccttgaaaggaacttcttgccactgaaacccaaacaacttg 4479455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 10535462 - 10535566
Alignment:
Q  41 acatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaac 140  Q
    ||||||| ||||||||| |  |||||||| ||||||||||| |  ||||||| |||||||||||||  ||||||||||||  ||||| |  |||||||||    
T  10535462 acatgcgcactggtcaagcggtgttcccc-tgaaaattgaaccatgtattcctcggatacgtccttggaaggagctccttgccactggagtccaaacaac 10535560  T
Q  141 ttggtt 146  Q
    ||||||    
T  10535561 ttggtt 10535566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 14846667 - 14846523
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||| |||  |||| | ||||||  |||||| ||||  ||| ||||||||||| ||| ||| ||| | |||||||||||| |||    
T  14846667 cccaccaaaggtggacgacttatctgactcatgcgtagaggcatgcgcactgaccaatcattgttcccc-tgagaatcgaacccggtattccccgggtac 14846569  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||| |||||||| |||  || || | ||||||||||||||||    
T  14846568 gtccttagaaggagcttcttgccagtggagcccaaacaacttggtt 14846523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 30903386 - 30903283
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||||||| ||||||| ||| ||||||| ||||| ||||||||||| ||||||| ||  ||| |||||||||  |||| | | |||||||||    
T  30903386 catgcgcactggtcaagcattgtttccc-tgaaaatcgaatccggtattccccgaatacgtcattggaagaagctccttactactggagcgcaaacaact 30903288  T
Q  142 tggtt 146  Q
    |||||    
T  30903287 tggtt 30903283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 10927684 - 10927553
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||||||||||  ||| | ||||||  |||||| ||||| ||| | ||||||| |||   ||| ||| | |||||||||||| ||||||||| |||| ||    
T  10927684 acgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctaggaatcgaacccggtattccccgggtacgtccttgaaagaag 10927585  T
Q  115 ctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||| ||||| ||||||||||    
T  10927584 ctccttgccactgaagcccaagcaacttggtt 10927553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 13085561 - 13085471
Alignment:
Q  56 aaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||| |||||||| |||| ||| ||| | ||||||||||||||||||||||  |||||||||||   ||||| | ||||||||| ||||||    
T  13085561 aaacgttgttccctctgagaatcgaacccggtattccccggatacgtccttggaaggagctcctcgccactggagcccaaacaagttggtt 13085471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 35496274 - 35496391
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacg 101  Q
    |||||||||| || ||| ||||||| ||||||||||||  |||||| ||||  |||   ||||| || |||||||||||| ||| |||||| | ||||||    
T  35496274 ccatcaaaggtgggcgattaatccagctcgtacgtagaggcatgcgcactgaccaagtgttgtttcctctgaaaattgaacctgatattcctc-gatacg 35496372  T
Q  102 tccttaaaaggagctcctt 120  Q
    ||||| ||| |||||||||    
T  35496373 tccttgaaatgagctcctt 35496391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 1013036 - 1013140
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||| ||||||| ||| | ||||||||||||  ||| ||| | ||||||||||||||||||||||  ||  ||||||||  ||||| | ||||| |||||    
T  1013036 catgtgtactggccaagcgttgttccccctgggaatcgaacccggtattccccggatacgtccttggaaaaagctccttgccactggagcccaagcaact 1013135  T
Q  142 tggtt 146  Q
    |||||    
T  1013136 tggtt 1013140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 38922473 - 38922577
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||| ||| | |||||||| |||  ||| ||| | |||||||||||| |||||||||  ||||||||||||  ||||| | ||||| |||||    
T  38922473 catgcgcactggccaagcgttgttccctctgggaatcgaacccggtattccccgggtacgtccttggaaggagctccttgccactggagcccaagcaact 38922572  T
Q  142 tggtt 146  Q
    |||||    
T  38922573 tggtt 38922577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 3418537 - 3418676
Alignment:
Q  7 aaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcctt 106  Q
    ||||| ||||||||||||  |||| | ||||||  |||||| ||||| |||   ||||||| ||| ||||| ||| | | |||||||| |||||||||||    
T  3418537 aaaggtggacgactaatctgactcatgcgtagacgcatgcgcactggccaagtgttgttcctcctaaaaatcgaacccgatattccccagatacgtcctt 3418636  T
Q  107 aaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
      ||||||||||||  ||| | |  |||||||||||||||    
T  3418637 ggaaggagctccttgccacgggagtccaaacaacttggtt 3418676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 9860073 - 9860159
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattcccc-ggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||  ||| ||| | |||||||||| ||||||||||||  ||||||||| ||  ||||| | ||||||||||||||||    
T  9860073 ttgttccccctgggaatcgaacccggtattcccccggatacgtccttggaaggagctctttgccactggatcccaaacaacttggtt 9860159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 18374090 - 18374004
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggata 99  Q
    |||||||||||||  ||| | ||||||  |||||| ||||||||| | |||||| |||||| ||| ||| |||||||| ||||||||    
T  18374090 ggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttctccctgagaatcgaacctggtatttcccggata 18374004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 36662484 - 36662351
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcctta-aaag 111  Q
    |||||||||||||   || ||||||||  |||||| |||||  ||  |||||||||| ||||||| ||| | | |||||| || ||||||||||  ||||    
T  36662484 ggacgactaatccggttcatacgtagaggcatgcgcactggctaagtattgttcccc-tgaaaatcgaacccgatattcctcgtatacgtccttggaaag 36662386  T
Q  112 gagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||| |||||||| || ||| |||||||||    
T  36662385 gagctccttctcactgaagcctaaagaacttggtt 36662351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 993275 - 993234
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcg 47  Q
    |||||| |||||||||||||||||| |||||||| |||||||    
T  993275 caaaggtggacgactaatccaactcatacgtagagacatgcg 993234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 8817029 - 8816980
Alignment:
Q  97 atacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||||||||||||||||||| | ||  |||||||| ||||||    
T  8817029 atacgtccttaaaaggagctccttatcattaaagtccaaacaatttggtt 8816980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 14666173 - 14666234
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||||||||||||  || |||||||||  ||||| | ||||| ||||||||||    
T  14666173 ggtattccccggatacgtccttggaatgagctccttgccactggagcccaagcaacttggtt 14666234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 15884657 - 15884718
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||| | |||||||||  ||||||||||||| ||||| | ||||| ||||||||||    
T  15884657 ggtattccccaggtacgtccttggaaggagctccttaccactggagcccaatcaacttggtt 15884718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 47219232 - 47219091
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||||| |||||||||||||  ||| | ||||||  |||||| ||| | ||| | ||||| ||| ||  ||| ||| ||||||||||||||||||    
T  47219232 cccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactagccaagcgttgtttcccttgggaatcgaacctggtattccccggatac 47219133  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaactt 142  Q
    ||||||  || |||||| ||| |||||||| |||||||||||    
T  47219132 gtccttggaaagagctcattaccactgaaatccaaacaactt 47219091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 51683014 - 51683118
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||||||| | ||||||||||||  ||| ||| ||||||||||||||||||||| ||  |||||||||||   ||||| | |||||||||||    
T  51683014 catgcgcactggtcaagcgttgttccccctgggaatcgaacctggtattccccggatacgtctttggaaggagctcctcgccactggagcccaaacaact 51683113  T
Q  142 tggtt 146  Q
    |||||    
T  51683114 tggtt 51683118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 7650315 - 7650170
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || ||||||||||  ||||| |||||| |||| |||||||| |||   |||||||||||| |||| ||| | |||||||||    |||    
T  7650315 cccaccaaaggtgggcgactaatccggctcgtgcgtagagacattcgtactggccaagtgttgttccccctggaaatcgaacccggtattccctaagtac 7650216  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
     ||||| |||||| ||||||  ||||| ||||||||||||||||||    
T  7650215 atccttgaaaggaactccttgccactggaacccaaacaacttggtt 7650170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 15320274 - 15320129
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| || ||||||||||  ||||| ||||||  |||||  ||||| ||| ||||||||| |||  |||| ||| | |||||||||||| |||    
T  15320274 cccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcacactggccaatcattgttcctcctcgaaatcgaacccggtattccccgggtac 15320175  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||||||  ||||| |  |||||||||||||||    
T  15320174 gtccttggaaggagctccttgccactggagtccaaacaacttggtt 15320129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 30045909 - 30045764
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||||| ||||||||||||  |||||| |||||| ||||||| ||||| ||| | |||||||||||   ||| ||| | ||||||||||   |||    
T  30045909 cccatcaaaggtggacgactaatcagactcgtgcgtagagacatgcgcactggccaagcgttgttccccctaggaatcgaacccggtattccccatgtac 30045810  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    || |||||||||||||| ||  ||||  | ||||| ||||||||||    
T  30045809 gttcttaaaaggagctcattgccacttgagcccaagcaacttggtt 30045764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 3136718 - 3136853
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| ||||||||||||| |||| | ||||||  |||||| ||||  |||   ||||||||| ||||||| ||||| |||||||||||| ||||||||    
T  3136718 caaaggtggacgactaatccgactcatgcgtagaggcatgcgcactgcccaagtgttgttcccc-tgaaaatcgaatccggtattccccgggtacgtcct 3136816  T
Q  106 taaaaggagctccttatcactgaaacccaaacaactt 142  Q
    | ||||||||| |||  ||| | | ||||||||||||    
T  3136817 tgaaaggagcttcttgccacgggagcccaaacaactt 3136853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 3755645 - 3755513
Alignment:
Q  14 gacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagga 113  Q
    ||||||||||||  ||| | |||||| ||||||| ||||||||||| ||||||| ||||  ||| |||   |||||||||||||||||||||| ||| ||    
T  3755645 gacgactaatccggctcatgcgtagagacatgcgcactggtcaaacgttgttcctcctgggaatcgaagtcggtattccccggatacgtccttgaaaaga 3755546  T
Q  114 gctccttatcactgaaacccaaacaacttggtt 146  Q
    |||| ||  ||||| |  |||| ||||||||||    
T  3755545 gctctttgccactggagtccaagcaacttggtt 3755513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 31072906 - 31072824
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttg 143  Q
    |||||||||||| |||| ||| ||||||||| |||| ||||||||| |||||||||||||  || || | |||||||||||||    
T  31072906 ttgttccccctggaaatcgaacctggtattctccgggtacgtccttgaaaggagctccttgccattggagcccaaacaacttg 31072824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 10040644 - 10040500
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| ||||||| | |||  ||||| ||||||  |||||| ||||| ||| | ||||||||| ||| ||| ||| | | |||||||||| |||    
T  10040644 cccaccaaaggtggacgaccattccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcccc-tgagaatcgaacccgatattccccgggtac 10040546  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||| ||||||||||||  ||||| | ||||| ||||||||||    
T  10040545 gtccttagaaggagctccttgccactggagcccaagcaacttggtt 10040500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 11687144 - 11687273
Alignment:
Q  17 gactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagct 116  Q
    ||||||||  |||| ||||||||  |||||| ||||| ||| ||||||||||||||| |||  || | ||||||| || | |||||||||  ||||||||    
T  11687144 gactaatctgactcatacgtagaggcatgcgcactggccaagcattgttccccctgagaatcaaacccggtattctccaggtacgtccttggaaggagct 11687243  T
Q  117 ccttatcactgaaacccaaacaacttggtt 146  Q
     |||  ||||| | ||||||||||||||||    
T  11687244 tcttgccactggagcccaaacaacttggtt 11687273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 13893954 - 13893869
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||| ||||  || | ||||||||||||| ||||||||  ||||||||||||  ||||| | ||||||||||||||||    
T  13893954 ttgttccccctggaaatccaacccggtattccccggacacgtccttggaaggagctccttgccactggagcccaaacaacttggtt 13893869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 45877482 - 45877397
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||| |||||| |||| ||| | ||||||||||||||||||||||  |||| |||||||  ||||| | ||||||||||||||||    
T  45877482 ttgtttcccctggaaatcgaacccggtattccccggatacgtccttggaaggggctccttgccactggagcccaaacaacttggtt 45877397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 24146433 - 24146492
Alignment:
Q  87 tattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||| |||| ||||||  |||||||||||| ||||||||| |||||||||||||||    
T  24146433 tattccccagatatgtccttggaaggagctccttgtcactgaaatccaaacaacttggtt 24146492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 46529947 - 46530034
Alignment:
Q  59 cattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||| || |||| ||| ||| | |||||||||| | ||||||||| |||||||||||||  ||||| | ||||||||||||||||    
T  46529947 cattgtttcctctgagaatcgaacccggtattccccaggtacgtccttgaaaggagctccttgccactggagcccaaacaacttggtt 46530034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 928683 - 928569
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| ||| |||||||||  ||||| |||||   |||||| |||||||||   ||||||||||||| ||| |||||||||||||||  | ||||||||    
T  928683 caaaggtggatgactaatccggctcgtgcgtagcggcatgcgcactggtcaagtgttgttccccctgagaatcgaatctggtattccctaggtacgtcct 928584  T
Q  106 taaaaggagctcctt 120  Q
    |  || |||||||||    
T  928583 tggaatgagctcctt 928569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 3763135 - 3762994
Alignment:
Q  4 atcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtc 103  Q
    ||||| || ||||||||||||||  |||| |||||| ||||||  ||||  ||| | ||||||| | ||  ||| ||||| |||||| ||||||||||||    
T  3763135 atcaatggtggacgactaatccagttcgtgcgtagagacatgcacactgaccaagcgttgttcctc-tgtgaatcgaatccggtatttcccggatacgtc 3763037  T
Q  104 cttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||| |||||||||| || |||||  | | ||||||||||||||    
T  3763036 cttgaaaggagctctttgtcactagagctcaaacaacttggtt 3762994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 6286153 - 6286075
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaa 139  Q
    |||||||  ||| |||| |||||||||||||||| ||||| |||||  |||||||||||| ||||| || |||||||||    
T  6286153 ttgttccttctggaaatcgaatctggtattcccctgatacttccttggaaggagctccttgtcactaaagcccaaacaa 6286075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 52364819 - 52364937
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||||||||||  ||||| ||||||| ||||| ||||||  |||||| ||||||||| | |||||||  |||  ||| |||   |||||||||||| |||    
T  52364819 cccatcaaaggtagacgattaatccagctcgtgcgtagaggcatgcgcactggtcaagcgttgttccttctgggaatcgaactcggtattccccgggtac 52364918  T
Q  101 gtccttaaaaggagctcct 119  Q
    ||||||  |||||||||||    
T  52364919 gtccttggaaggagctcct 52364937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 25294964 - 25294903
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||||||||||||  ||||||||||||  ||||| | ||||| ||||||||||    
T  25294964 ggtattccccggatacgtccttggaaggagctccttgccactggagcccaagcaacttggtt 25294903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 29135941 - 29135856
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||  ||| ||||||||  ||||| | ||||| ||| ||||||    
T  29135941 ttgttccccctgggaatcgaatccggtattccccggatacgtccttggaagaagctccttgccactggagcccaagcaatttggtt 29135856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 49198427 - 49198294
Alignment:
Q  13 ggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaagg 112  Q
    |||||||||||||  ||| | ||||||  |||||| ||||| |||   |||||||||||   ||| ||| | ||||||||||||||| ||||||  |||     
T  49198427 ggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctaggaatcgaacccggtattccccggatatgtccttggaaga 49198328  T
Q  113 agctccttatcactgaaacccaaacaacttggtt 146  Q
    | |||||| |||||| | ||||||||||||||||    
T  49198327 aactccttgtcactggagcccaaacaacttggtt 49198294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 53649814 - 53649697
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacg 101  Q
    |||||||||| | |||||||||||  ||| | |||||| ||| ||| ||||| |||   |||||| |||||| ||| ||| | ||||||||||| |||||    
T  53649814 ccatcaaaggtgaacgactaatccggctcatgcgtagagacaggcgcactggccaagtgttgttcaccctgagaatcgaacccggtattccccgaatacg 53649715  T
Q  102 tccttaaaaggagctcct 119  Q
    |||||  |||||||||||    
T  53649714 tccttggaaggagctcct 53649697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 41630572 - 41630676
Alignment:
Q  42 catgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    |||||| ||||| ||| | ||||||||| ||  ||||||| | ||||||  |||| ||||||| |  |||||||||||| |||||| | |||||||||||    
T  41630572 catgcgcactgggcaagcgttgttccccttgggaattgaacccggtattttccggttacgtccatggaaggagctccttgtcactggagcccaaacaact 41630671  T
Q  142 tggtt 146  Q
    |||||    
T  41630672 tggtt 41630676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 49082828 - 49082772
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaact 141  Q
    ||||||||||||||||||||||| |||||||||| |  ||||| | |||||||||||    
T  49082828 ggtattccccggatacgtccttagaaggagctccctgccactggagcccaaacaact 49082772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7648828 - 7648753
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaa 76  Q
    |||| |||||| || ||||||||||  ||||| ||||||   ||||| ||||||||||| ||||||||||||||||    
T  7648828 cccaacaaaggtgggcgactaatccggctcgtgcgtagaggtatgcgcactggtcaaacgttgttccccctgaaaa 7648753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 35923643 - 35923786
Alignment:
Q  2 ccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacg 101  Q
    |||||||||  ||||||||||| | |||||| | ||||  |||||| ||||| ||||| |||||||||||   ||| ||| ||||||||| || | ||||    
T  35923643 ccatcaaagatggacgactaattcgactcgtgcttagaggcatgcgcactggccaaacgttgttccccctatgaatcgaacctggtattctccaggtacg 35923742  T
Q  102 tccttaaaaggagctccttatcactgaaacccaaacaacttggt 145  Q
    |||||  || |||||| ||  ||||  | |||||||||||||||    
T  35923743 tccttggaatgagctcattgccactagagcccaaacaacttggt 35923786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 49543553 - 49543462
Alignment:
Q  55 caaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||| ||||||||| ||| ||| ||| | | ||||||| ||||||||||||  ||||||||||||  |||| || ||||||||| ||||||    
T  49543553 caaacgttgttccccatgagaatcgaacccgatattcccgggatacgtccttggaaggagctccttgccactaaagcccaaacaaattggtt 49543462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 54261300 - 54261169
Alignment:
Q  15 acgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggag 114  Q
    |||||||||||  ||| | ||||||  |||||| ||||| ||| | ||||||| |||   ||| ||| | |||||||||| | |||||||||  ||||||    
T  54261300 acgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctaggaatcgaacccggtattccccaggtacgtccttggaaggag 54261201  T
Q  115 ctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||| | ||||||||||||||||    
T  54261200 ctccttgccactggagcccaaacaacttggtt 54261169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 4638147 - 4638097
Alignment:
Q  96 gatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||||||||| ||||||  |||||||  |||||||||||||||    
T  4638147 gatacgtccttaaaaggaactccttgccactgaagtccaaacaacttggtt 4638097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 35316029 - 35315899
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||| ||| | ||||||  |||||| ||||| |||   ||||||||||||  ||| ||| | | ||||| |||| |||||||||  |||||||    
T  35316029 cgactaatccagctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacccgatattctccgggtacgtccttggaaggagc 35315930  T
Q  116 tccttatcactgaaacccaaacaacttggtt 146  Q
    || ||  ||||| | ||||||||||||||||    
T  35315929 tctttgccactggagcccaaacaacttggtt 35315899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 10855444 - 10855327
Alignment:
Q  29 tcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactga 128  Q
    |||| ||||||  |||||||||||| ||| | |||||||||||| ||||  || | |||||| |||   ||| |||||  ||||||||||||  |||||     
T  10855444 tcgtgcgtagaggcatgcgtactggccaagcgttgttccccctggaaatcaaacccggtatttcccaagtacatccttggaaggagctccttgccactgg 10855345  T
Q  129 aacccaaacaacttggtt 146  Q
    | ||||||||||||||||    
T  10855344 agcccaaacaacttggtt 10855327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 29127947 - 29127862
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||| ||||| |||| ||| | | |||||||| |||||||||||  ||||| ||||||  ||||| | ||||||||||||||||    
T  29127947 ttgttctccctggaaatcgaacccgatattccccagatacgtccttggaaggatctccttgccactggagcccaaacaacttggtt 29127862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 33251750 - 33251605
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    ||||||||| | |||||||||||||  ||| | ||||||  |||||  ||||| ||||| |||||||| | |  ||| ||| | ||||||||||  ||||    
T  33251750 cccatcaaatgtggacgactaatccggctcatgcgtagaggcatgcacactggccaaacgttgttcccaccgggaatcgaacccggtattcccctaatac 33251651  T
Q  101 gtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||  ||||||||| ||  ||| | | ||||||||||||||||    
T  33251650 gtccttggaaggagctcattgccaccggagcccaaacaacttggtt 33251605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 34374525 - 34374581
Alignment:
Q  89 ttccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||| |||||||||||  | |||||||||| |||||||| ||||||||||||||||    
T  34374525 ttcccctgatacgtccttgga-ggagctccttgtcactgaagcccaaacaacttggtt 34374581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 42412877 - 42412938
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||||||||||||  ||||||||||||  || || | ||||| ||||||||||    
T  42412877 ggtattccccggatacgtccttggaaggagctccttgccattggagcccaagcaacttggtt 42412938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 48342048 - 48341963
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||||||   ||| ||| | |||||||||| | |||||||||  ||||||||||||  ||||| | ||||||||||||||||    
T  48342048 ttgttccccctaggaatagaacccggtattccccaggtacgtccttggaaggagctccttgccactggagcccaaacaacttggtt 48341963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 6462485 - 6462381
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    ||||||||||  ||| | ||||||  |||||| ||||| ||| | |||||| |||||  ||| ||| | |||||||||| |||||||||||  |||||||    
T  6462485 cgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttctccctgtgaatcgaacccggtattccccagatacgtccttggaaggagc 6462386  T
Q  116 tcctt 120  Q
    |||||    
T  6462385 tcctt 6462381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23511655 - 23511587
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttcccc 69  Q
    ||||||||||| |||||| |||||| |||| | ||||||  |||||| ||||||||||| ||| |||||    
T  23511655 cccatcaaaggtggacgattaatccgactcatgcgtagaggcatgcgcactggtcaaacgttgctcccc 23511587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 32873573 - 32873712
Alignment:
Q  6 caaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtcct 105  Q
    |||||| || |||||||||   ||| ||||||||  |||| | ||||||||| | |||||| ||||   ||| ||| ||||||||||| || ||||||||    
T  32873573 caaaggtgggcgactaatctggctcatacgtagaggcatgtgcactggtcaagcgttgttctccctaggaatcgaacctggtattcccggg-tacgtcct 32873671  T
Q  106 taaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |  || |||||||||  ||||| | ||||||||||||||||    
T  32873672 tggaatgagctccttgccactggagcccaaacaacttggtt 32873712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 55069783 - 55069843
Alignment:
Q  86 gtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||| | |||||||||| ||| |||||| || |||||| | ||||||||||||||||    
T  55069783 gtattccctgaatacgtccttgaaaagagctcattgtcactggagcccaaacaacttggtt 55069843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 319513 - 319394
Alignment:
Q  1 cccatcaaaggcggacgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatac 100  Q
    |||| |||||| |||||||||||||| ||| | | ||||   ||||| ||||| ||| | |||||||||||  ||||  || | ||||||||||||||||    
T  319513 cccaccaaaggtggacgactaatccagctcatgcatagagggatgcgcactggccaagcgttgttccccctagaaatcaaacccggtattccccggatac 319414  T
Q  101 gtccttaaaaggagctcctt 120  Q
    ||||||  ||||||||||||    
T  319413 gtccttggaaggagctcctt 319394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 601 - 516
Alignment:
Q  61 ttgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||  ||| ||| | |||||||||||| |||||||||  ||||||||||||  ||||  | ||||| ||||||||||    
T  601 ttgttccccctgcgaatcgaacccggtattccccgggtacgtccttggaaggagctccttgccactagagcccaagcaacttggtt 516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 412128 - 412189
Alignment:
Q  85 ggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    ||||||||||||||||||||||  ||||||||| |   ||||||| ||||| ||||||||||    
T  412128 ggtattccccggatacgtccttggaaggagctcatcgccactgaagcccaagcaacttggtt 412189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 249338 - 249438
Alignment:
Q  16 cgactaatccaactcgtacgtagaaacatgcgtactggtcaaacattgttccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagc 115  Q
    |||||||||| |||||| ||||||   ||| | ||||||||| | || ||| |||||| ||| ||| ||||||||||||  ||||||||||| |||||||    
T  249338 cgactaatccgactcgtgcgtagaggtatgtgcactggtcaagcgttattctccctgagaatcgaacctggtattccccaaatacgtccttagaaggagc 249437  T
Q  116 t 116  Q
    |    
T  249438 t 249438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 6000 - 5919
Alignment:
Q  65 tccccctgaaaattgaatctggtattccccggatacgtccttaaaaggagctccttatcactgaaacccaaacaacttggtt 146  Q
    |||||||| |||| ||| |  ||||||||||| |||| |||| |||||||||||||  ||||  ||||||| ||||||||||    
T  6000 tccccctggaaatcgaacccagtattccccgggtacgcccttgaaaggagctccttgccactagaacccaagcaacttggtt 5919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University