View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_low_39 (Length: 249)
Name: NF14579_low_39
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 6695875 - 6696015
Alignment:
| Q |
17 |
agaacaaatttgaagagagtaacgcacatttcgtgttaatgcttatatggtaccagggtgagttggaccatagtgagttactgtaattttattaaaatgt |
116 |
Q |
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| T |
6695875 |
agaacaaatttgaagggagtaacgcacatttcgtgttaatgcttatatggtaccagggtgagttggaccgtagtaaattactgtaattttattaaaatgt |
6695974 |
T |
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| Q |
117 |
acactttgtgactaggacaaaatcacggtgtagtcgtgatt |
157 |
Q |
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| T |
6695975 |
acactttgtgacttggacaaaatcacggtgtagtcgtgatt |
6696015 |
T |
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Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 6696200 - 6696297
Alignment:
| Q |
152 |
gtgattttttccaactcacggtcatgccaataatgcacttaattaagaatcggtaacttcaaaaatgatattttgtgagaagaaaagggaaggaagtt |
249 |
Q |
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| T |
6696200 |
gtgattttttccaactcacggtcatgccaataatgcacttaattaagaatcggtaacttcaaaaatgatattttgtgagaagaaaagggaaggaagtt |
6696297 |
T |
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