View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_low_4 (Length: 537)
Name: NF14579_low_4
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 44109955 - 44109435
Alignment:
| Q |
1 |
gaattaatgcatagtctctcttatcgacgattttgccaattccctaaataagaatcaattaacaagttagcggatagaagtaatatcactgttttaacat |
100 |
Q |
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| T |
44109955 |
gaattaatgcatagtctctcttatcgacgattttgccaattccctaaataagaatcaattaacaagttagcggatagaagtaatatcactgttttaacat |
44109856 |
T |
|
| Q |
101 |
ttaaatgaggcagattaagcaggatataaggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattccagtattgtttttcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
44109855 |
ttaaatgaggcagattaagcaggatataaggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattccagtactgtttttata |
44109756 |
T |
|
| Q |
201 |
gtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcatagaaaggatactnnnnnn |
300 |
Q |
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| T |
44109755 |
gtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcatagagaggatcct-aaaaa |
44109657 |
T |
|
| Q |
301 |
nntgtaacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacgcattatattatacacaatatttaaaaagataaatgatg |
400 |
Q |
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| T |
44109656 |
aatgaaacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacacattatattatacacaatatttaaaaagataaatgatg |
44109557 |
T |
|
| Q |
401 |
atgatcagataaaagataatacataccttcaaagcgttcgctgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggag |
500 |
Q |
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| T |
44109556 |
atgatcagataaaagataatacataccttcaaagcgtttgctgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggag |
44109457 |
T |
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| Q |
501 |
aaacatgccataacatgttgat |
522 |
Q |
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| T |
44109456 |
aaacatgccataacaggttgat |
44109435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 40276869 - 40276437
Alignment:
| Q |
1 |
gaattaatgcatagtctctcttatcgacgattttgccaattccctaaataagaatcaattaacaagttagcggatagaagt-aatatcactgttttaaca |
99 |
Q |
| |
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||||| ||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||| |
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| T |
40276869 |
gaatttatgcatagtttctcttatccacgagtttgccaattccctaaattggaatcaattaacaagttagtggatagaagtaaatatcattgttttaaca |
40276770 |
T |
|
| Q |
100 |
tttaaatgaggcagattaagcaggata----taaggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattccagtattgttt |
195 |
Q |
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| T |
40276769 |
atgaaatgagacagattaagcaggatataattaaggtgtacctgaggaaaaacaagagcttccaatttaggacaccttaagaggaattccattaatgttt |
40276670 |
T |
|
| Q |
196 |
ttctagtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcatagaaaggatactn |
295 |
Q |
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||||| |||| ||||| | || |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||| ||| | || |
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| T |
40276669 |
ttctactgaa---gataatctccaaatccagacaaagatgtgtcaaattgtggagctcaggaaggggatggagatgatcaattacatagagaggttccta |
40276573 |
T |
|
| Q |
296 |
nnnnnnntgtaacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacgc-----attatattatacacaatatttaaaaag |
390 |
Q |
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| |||| |||||| |||||||||||||||| | ||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |
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| T |
40276572 |
gtaaaag-gaaacaacaatagacttgcatgggaaacacagccaaaggcaacattgtgcgtcaatacgcatcttattatattatacacaatatttaaaaag |
40276474 |
T |
|
| Q |
391 |
ataaatgatgatgatcagataaaagataatacatacc |
427 |
Q |
| |
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|||||||| |||| ||||| |||||| |||||||||| |
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| T |
40276473 |
ataaatgaagatgttcagaaaaaagacaatacatacc |
40276437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 43 - 285
Target Start/End: Original strand, 40450469 - 40450710
Alignment:
| Q |
43 |
cctaaataagaatcaattaacaagttagcggatagaagtaatatcactgttttaacatttaaatgaggcagatta--agcaggatataaggcgtaccaga |
140 |
Q |
| |
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||||||||||||||||||||||||| | |||| ||| |||||||| || |||||| | ||||| || |||||| || ||||||||||| |||||||| |
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| T |
40450469 |
cctaaataagaatcaattaacaagtcaatggatggaaataatatcattgatttaacctagaaatgggggagattataagaaggatataaggtgtaccaga |
40450568 |
T |
|
| Q |
141 |
ggaacaacaagagtttccagtttaggacaccttaagaggaattccagtattgtttttctagtgaaaggtttaatcctccgatg-cagacaaagatgtgtc |
239 |
Q |
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|| | |||||| | |||||||||||||||||||| ||| ||||||| || |||||||||| |||| | ||| |||| | | |||||||||||||||| |
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| T |
40450569 |
ggtaaaacaagtgcttccagtttaggacaccttaggagaaattccattaatgtttttctactgaa---gtcaat-ctccaaagtcagacaaagatgtgtc |
40450664 |
T |
|
| Q |
240 |
aaattgtggaactcgggaaggagatggagatgatcaattgcataga |
285 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
40450665 |
aaattgtggaactcaggaaggagatggagatgatcaattacataga |
40450710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 370 - 501
Target Start/End: Original strand, 40450765 - 40450897
Alignment:
| Q |
370 |
ttatacacaatatttaaaaagat-aaatgatgatgatcagataaaagataatacataccttcaaagcgttcgctgatagtgcgagagacttgacacttgc |
468 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||| ||| ||||| ||||||||||| | |||| || | |||||||| ||||||||||||||||| |
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| T |
40450765 |
ttatacacaatatttaaaaagattaaatgaagatgatgagagaaaaggtaatacataccctaaaagtgtcctttgatagtgtaagagacttgacacttgc |
40450864 |
T |
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| Q |
469 |
aagtccactcaatagcacaactgaataaggaga |
501 |
Q |
| |
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||||||||||| ||||||||| ||||||||||| |
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| T |
40450865 |
aagtccactcagtagcacaaccgaataaggaga |
40450897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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