View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_low_41 (Length: 235)
Name: NF14579_low_41
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 42155344 - 42155549
Alignment:
| Q |
16 |
caacaaattgtttctagggtgaaatttgaaaattaatgttaatttggactatactatgtcagtgtatacaggatgtcacacttgatgaacaaatgcagga |
115 |
Q |
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| T |
42155344 |
caacaaattgtttctagggtgaaatttgaaaattaatgttaatttggactatacgatgtcagtgtatacaggatgtcacacttgatgaacaaatgcagga |
42155443 |
T |
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| Q |
116 |
catcactggagtttttctttgccatatggtttgtgatgggaaatgtttgggttttcgactcgcgatttggttcatttcaacaagctccaaaacttcatgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42155444 |
catcactggagtttttctttgccatatggtttgtgatgggaaatgtttgggttttcgactcgcgatttggttcatttcaacaagctccaaaacttcatgt |
42155543 |
T |
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| Q |
216 |
cctatg |
221 |
Q |
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|||||| |
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| T |
42155544 |
cctatg |
42155549 |
T |
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