View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14579_low_42 (Length: 230)
Name: NF14579_low_42
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_low_42 |
 | |
|
| [»] chr6 (31 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4574819 - 4575048
Alignment:
| Q |
1 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4574819 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaatccattcaagacatttagtatcttctttcc |
4574918 |
T |
|
| Q |
101 |
aaagattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
4574919 |
aaagattagagtctaaagatgtcaagtcattttgtggactttgatttacaaaagaagctaatggaccaattgtgtatagagaagggaacatagaatagaa |
4575018 |
T |
|
| Q |
201 |
agcattcataacatcactctcaagttcatt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4575019 |
agcattcataacatcactctcaagttcatt |
4575048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4561015 - 4561244
Alignment:
| Q |
1 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcc |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4561015 |
ttctcttgagacttaacagtgatgctgccaaaatttacataaacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttctttcc |
4561114 |
T |
|
| Q |
101 |
aaagattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
4561115 |
aaagattacagtctaaagatgtcaagtgattttgtggactttgatttacaaaagaagctaatggaccaattgtgtatagagaagggaacatagaatagaa |
4561214 |
T |
|
| Q |
201 |
agcattcataacatcactctcaagttcatt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4561215 |
agcattcataacatcactctcaagttcatt |
4561244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4266787 - 4266559
Alignment:
| Q |
1 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcc |
100 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4266787 |
ttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagatcttggttcttttgattcaagccactcaagacatttagtatcttctttcc |
4266688 |
T |
|
| Q |
101 |
aaagattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaa |
200 |
Q |
| |
|
||||||| || | |||||||| ||||| |||||||||||||||||||| ||||||||| ||||| ||||| ||||||| |||||| |||| ||| |||| |
|
|
| T |
4266687 |
aaagattggaatttaaagatgccaagtgattttgtggactttgatttaaaaaagaagcaaatgggccaatggtgtatatagaagggaacatagagtagag |
4266588 |
T |
|
| Q |
201 |
agcattcataacatcactctcaagttcat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4266587 |
agcattcataacatcactctcaagttcat |
4266559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4481204 - 4481432
Alignment:
| Q |
1 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcc |
100 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4481204 |
ttctcttgagacataattgtgatgctgccaaaatttacataaacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttctttcc |
4481303 |
T |
|
| Q |
101 |
aaagattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaa |
200 |
Q |
| |
|
|||||||||||||||| | | ||||| || ||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| || | |||||||| |
|
|
| T |
4481304 |
aaagattagagtctaatgtttccaagtgatattgtggactttgatttaaaaaagaagccaatggaccaatggtgtatagagaagggaatatagaatagag |
4481403 |
T |
|
| Q |
201 |
agcattcataacatcactctcaagttcat |
229 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
4481404 |
agaattcataacatcactctcaagttcat |
4481432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 4504010 - 4503834
Alignment:
| Q |
9 |
agacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagatta |
108 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4504010 |
agacataactgtaatgctgccaaaatttacataaacaacagatcctggttcttttaattcaagccaatcaagacatttagtatcttctttccaaagatta |
4503911 |
T |
|
| Q |
109 |
gagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaagg |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4503910 |
gagtctaaagatgtcaagtcattttgtggactttgatttacaaaagaagctaatggaccaattgtgtatagagaagg |
4503834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4489976 - 4489747
Alignment:
| Q |
1 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4489976 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttctttcc |
4489877 |
T |
|
| Q |
101 |
aaagattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaa |
200 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||| |||||| || |||||||| ||||| ||||||||||||| |||||| || | |||| | |
|
|
| T |
4489876 |
aaagattagagtctaaagatttcaagtgattttctggaatttgatctaaaaaagaagaaaatgggccaattgtgtatacagaagggaatatagaactaag |
4489777 |
T |
|
| Q |
201 |
agcattcataacatcactctcaagttcatt |
230 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| |
|
|
| T |
4489776 |
agcattgatagcatcactctcaagttcatt |
4489747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3172252 - 3172481
Alignment:
| Q |
1 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcc |
100 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3172252 |
ttctcttgagacataactatgatgctgccaaaatttacataaacaacagattttgattcttttgtttcaagccattcaagacatttagtatcttctttcc |
3172351 |
T |
|
| Q |
101 |
aaagattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaa |
200 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||||| ||||||||| ||| ||| ||||| || ||||||||||||||||||||||| || | |||| | |
|
|
| T |
3172352 |
aaagattagaatctaaagatgccaagtgattttgcggactttgacttaaaaacgaagcgaacggaccaattgtgtatagagaagggaatatagaactaag |
3172451 |
T |
|
| Q |
201 |
agcattcataacatcactctcaagttcatt |
230 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
3172452 |
agtattcataacatcactctcaagttcatt |
3172481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4458106 - 4458334
Alignment:
| Q |
1 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcc |
100 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4458106 |
ttctcttgagacataactgtgatgcttccaaaatttacataaataacagactttggttcttttgattcaagccactcaagacatttagtatattctttcc |
4458205 |
T |
|
| Q |
101 |
aaagattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaa |
200 |
Q |
| |
|
||||||| || | |||||||| ||||| |||||||||||||||||||| ||||||||| ||||| ||||| ||||||| |||||| |||| ||| |||| |
|
|
| T |
4458206 |
aaagattggaatttaaagatgccaagtgattttgtggactttgatttataaaagaagcaaatgggccaatggtgtatatagaagggaacatagagtagag |
4458305 |
T |
|
| Q |
201 |
agcattcataacatcactctcaagttcat |
229 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
4458306 |
agtattcataacatcactctcaagttcat |
4458334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 4514735 - 4514513
Alignment:
| Q |
8 |
gagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagatt |
107 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4514735 |
gagacataatcgtgatgctaccaaaattaacataaacaacagatcctgattcttttgattcaagccattcaagacatttagtatcttctttccaaagatt |
4514636 |
T |
|
| Q |
108 |
agagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattc |
207 |
Q |
| |
|
|| |||||||| ||||| |||||||||||||||||| | ||| ||||| ||||| ||||| |||||||||||||| | || |||||| | ||||||| |
|
|
| T |
4514635 |
ggaacctaaagattccaagtgattttgtggactttgattcaaaaacgaagcaaatgggccaatggtgtatagagaagggagcatagaataaagagcattc |
4514536 |
T |
|
| Q |
208 |
ataacatcactctcaagttcatt |
230 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
4514535 |
ataacatcactctcaagatcatt |
4514513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 4461645 - 4461863
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagag |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4461645 |
cataactgtgatgctgccaaaatttacatagacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattggaa |
4461744 |
T |
|
| Q |
112 |
tctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataa |
211 |
Q |
| |
|
| |||||||| || || |||||||||||||||||||| |||||||| | ||||||||| |||||||||||||| || | | |||||| ||||||||| |
|
|
| T |
4461745 |
tttaaagatgccaggtgattttgtggactttgatttataaaagaagaaagtggaccaatggtgtatagagaagggaatataaaatagagttcattcataa |
4461844 |
T |
|
| Q |
212 |
catcactctcaagttcatt |
230 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
4461845 |
tatcactttcgagttcatt |
4461863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4470314 - 4470543
Alignment:
| Q |
1 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcc |
100 |
Q |
| |
|
|||||| |||||||||| |||| |||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4470314 |
ttctctggagacataactgtgacgctgccgaaatttacatagacaacagatcctggttcttttgattcaagccactcaagacatttagtatcttctttcc |
4470413 |
T |
|
| Q |
101 |
aaagattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaa |
200 |
Q |
| |
|
||||||| | | |||||||| | | |||||||||||||||||||| |||||||| | ||||||||| | |||||||||||| || | |||||||| |
|
|
| T |
4470414 |
aaagattgaaatttaaagatgctagatgattttgtggactttgatttaaaaaagaagaaagtggaccaatggcgtatagagaagggaatatagaatagag |
4470513 |
T |
|
| Q |
201 |
agcattcataacatcactctcaagttcatt |
230 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
4470514 |
ttcattcataacatcactttcaagttcatt |
4470543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 4506375 - 4506597
Alignment:
| Q |
8 |
gagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagatt |
107 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
4506375 |
gagacataattgtgatgcttccaaaattcacataaacaacagaagccggttcttttgattccagccattcgagacatttagtatcctctttccaaagatt |
4506474 |
T |
|
| Q |
108 |
agagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattc |
207 |
Q |
| |
|
|| ||||||| || || | |||||||||||||||||||| ||| |||| ||| || ||||| ||||||||||||||||||| | || | ||||||| |
|
|
| T |
4506475 |
tgaatctaaagttgcaaactgattttgtggactttgatttacaaatgaagttaaagggccaatagtgtatagagaaggaaacataatatcaagagcattc |
4506574 |
T |
|
| Q |
208 |
ataacatcactctcaagttcatt |
230 |
Q |
| |
|
| ||||| ||||||||||||||| |
|
|
| T |
4506575 |
agaacattactctcaagttcatt |
4506597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 4299440 - 4299214
Alignment:
| Q |
3 |
ctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaa |
102 |
Q |
| |
|
|||| ||| |||||| || | |||||||||||| ||||||||||| |||| || || || ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4299440 |
ctctggagtcataactgtaacgctgccaaaattcacataaacaaccgatcccggctccttggattcaagccattcaagacatttggtatcttctttccaa |
4299341 |
T |
|
| Q |
103 |
agattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaag |
202 |
Q |
| |
|
||||| || |||||||| ||||| ||| |||||| ||||||||| || |||| ||| || ||||| || |||| |||||| |||| |||||||| || |
|
|
| T |
4299340 |
agattggaacctaaagattccaagtgattatgtggagtttgatttaataatgaaggtaaaggtccaatagtatataaagaagggaacatagaatagagag |
4299241 |
T |
|
| Q |
203 |
cattcataacatcactctcaagttcat |
229 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
4299240 |
cattcattacatcactctcaagttcat |
4299214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 4259764 - 4259547
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagag |
111 |
Q |
| |
|
|||||| || |||||||||||||| || ||||||||||| ||||| || |||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
4259764 |
cataactgtaatgctgccaaaattcacgtaaacaacagactcaggttccttaaattcaagccattcaagacatttggtatcttctttccaaagattggaa |
4259665 |
T |
|
| Q |
112 |
tctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataa |
211 |
Q |
| |
|
|||| |||| || || ||| |||||| ||||||||| || |||| ||| || ||||| | |||| |||||| |||| |||||||| ||||||| | |
|
|
| T |
4259664 |
cctaacgatgccaggtgattatgtggagtttgatttaataatgaaggtaaaggtccaatagcatataaagaagggaacatagaatagagcacattcatta |
4259565 |
T |
|
| Q |
212 |
catcactctcaagttcat |
229 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4259564 |
catcactctcaagttcat |
4259547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 4598703 - 4598851
Alignment:
| Q |
22 |
atgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagagtctaaagatg |
121 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||| || ||||||||||| |||||||| || |||||||||||||||||||| | ||||||||| |
|
|
| T |
4598703 |
atgctcccaaaattcacataaacaacagaccttggttcattggattcaagccagtcaagacacttggtatcttctttccaaagattggtacctaaagatg |
4598802 |
T |
|
| Q |
122 |
tcaagtcattttgtggactttgatttagaaaagaagctaatggaccaat |
170 |
Q |
| |
|
||| | |||||| |||||||||||| ||| |||| ||| || ||||| |
|
|
| T |
4598803 |
ccaaatgcttttgttgactttgatttaaaaacgaagataaagggccaat |
4598851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 4516850 - 4516977
Alignment:
| Q |
19 |
gtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagagtctaaag |
118 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| | | |||| || ||||||||||||||||||||||| |||||||||||||||||||||| ||| || |
|
|
| T |
4516850 |
gtgatgcttccaaaattcacataaactacagaaccttgttccttagattcaagccattcaagacatttcatatcttctttccaaagattagaacctatag |
4516949 |
T |
|
| Q |
119 |
atgtcaagtcattttgtggactttgatt |
146 |
Q |
| |
|
| | ||||| |||||| ||||||||||| |
|
|
| T |
4516950 |
aagccaagttattttgcggactttgatt |
4516977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 4626485 - 4626690
Alignment:
| Q |
24 |
gctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagagtctaaagatgtc |
123 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||| || ||||||||||||||||||| || || ||||||||||||||||| || |||||||| || |
|
|
| T |
4626485 |
gctgccaaagttcacataaacaacagactttggttccttgaattcaagccattcaagacaattggtgtcttctttccaaagattggaacctaaagatatc |
4626584 |
T |
|
| Q |
124 |
aagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctcaa |
223 |
Q |
| |
|
|| | |||||||||||| |||| | || |||| || || ||||| || |||| |||| | ||| |||||||| |||||||| ||||||| ||||| |
|
|
| T |
4626585 |
aactggttttgtggacttcgattcaaaagagaatgcaaaggtccaatggtatatacagaaaggaacgtagaatagagcgcattcattacatcaccctcaa |
4626684 |
T |
|
| Q |
224 |
gttcat |
229 |
Q |
| |
|
|||||| |
|
|
| T |
4626685 |
gttcat |
4626690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 4564233 - 4564453
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagag |
111 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||||||| |||| || || || |||||||||||||||||||| |||||||||||||||||||| || || |
|
|
| T |
4564233 |
cataactgtaatgcttccaaaattcacataaacaacggatcccggctccttggattcaagccattcaagacacttagtatcttctttccaaaggttggaa |
4564332 |
T |
|
| Q |
112 |
tctaaagatgtcaagtcat---tttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattca |
208 |
Q |
| |
|
||||||| ||| | || |||||||| |||| |||| || |||| ||| || ||||| | ||| ||||||||||||| ||| ||| |||||| | |
|
|
| T |
4564333 |
cctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaacatagaggagagagcattta |
4564432 |
T |
|
| Q |
209 |
taacatcactctcaagttcat |
229 |
Q |
| |
|
| |||||||||| |||||||| |
|
|
| T |
4564433 |
ttacatcactctaaagttcat |
4564453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 4256234 - 4256098
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagag |
111 |
Q |
| |
|
|||||| || |||||||||||||| || ||||||||||| ||||| || |||||||||||||||||||| || |||||||||||||||||||| || |
|
|
| T |
4256234 |
cataactgtaatgctgccaaaattcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttctttccaaagattggaa |
4256135 |
T |
|
| Q |
112 |
tctaaagatgtcaagtcattttgtggactttgattta |
148 |
Q |
| |
|
|||| |||| ||||| | | |||||| ||||||||| |
|
|
| T |
4256134 |
cctaacgatgccaagtgactatgtggagtttgattta |
4256098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 4579970 - 4580112
Alignment:
| Q |
28 |
ccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagagtctaaagatgtcaagt |
127 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| || ||||||||||| | |||||| || |||||||||||||||| ||| | | |||||||||||| | |
|
|
| T |
4579970 |
ccaaaattcacataaacaacagacctaggttccttggattcaagccaataaagacacttggtatcttctttccaaaaattggtgcttaaagatgtcaaat |
4580069 |
T |
|
| Q |
128 |
cattttgtggactttgatttagaaaagaagctaatggaccaat |
170 |
Q |
| |
|
|||| |||||||||||||| ||| |||| ||| || ||||| |
|
|
| T |
4580070 |
ggttttctggactttgatttaaaaacgaagataaagggccaat |
4580112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 4586169 - 4586294
Alignment:
| Q |
23 |
tgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagagtctaaagatgt |
122 |
Q |
| |
|
|||| |||||||| ||||||||||| || || ||||| |||||||||||||| |||||||| || ||||| |||||||||||||| | |||||||| |
|
|
| T |
4586169 |
tgctcccaaaattcacataaacaacggacctcggttcctttgattcaagccaatcaagacacttggtatcctctttccaaagatttgtacttaaagatgc |
4586268 |
T |
|
| Q |
123 |
caagtcattttgtggactttgattta |
148 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
4586269 |
taagtggttttgtggactttgattta |
4586294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 4613328 - 4613170
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagag |
111 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||||||| || | ||||| || ||||||||||| |||||||| || |||||||||||||||||||| | |
|
|
| T |
4613328 |
cataacggtcatgctcccaaaattcacataaacaacggacttcggttccttggattcaagccaatcaagacacttggtatcttctttccaaagattggta |
4613229 |
T |
|
| Q |
112 |
tctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaat |
170 |
Q |
| |
|
|||| || ||||| |||||||||||||||| ||| || |||| ||| |||||||| |
|
|
| T |
4613228 |
cttaaacttgccaagtgattttgtggactttgacttaaaagtgaagataaaggaccaat |
4613170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 4602311 - 4602400
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcca |
101 |
Q |
| |
|
|||||| || |||||||||||||| ||||||||||| |||| || || || |||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4602311 |
cataactgtaatgctgccaaaattcacataaacaacggatcccggctccttggattcaagccattcaagacactcagtatcttctttcca |
4602400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 4571505 - 4571589
Alignment:
| Q |
23 |
tgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagatt |
107 |
Q |
| |
|
|||| |||||||| ||||||||||| || || ||||| |||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
4571505 |
tgctcccaaaattcacataaacaacggacctcggttcctttgattcaagccaatcaagacacttgttatcttctttccaaagatt |
4571589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 4622656 - 4622880
Alignment:
| Q |
4 |
tctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaa |
103 |
Q |
| |
|
||||||| ||| || || |||||||||||||| || ||||||| || || ||||| || ||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
4622656 |
tctcgagtcatcactgtaatgctgccaaaattcacgtaaacaagag-tca-ggttccttggattcaagccactcaagacacttgatatcttctttccaaa |
4622753 |
T |
|
| Q |
104 |
gattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagc |
203 |
Q |
| |
|
|||| || ||| ||||| ||||| ||| |||||| ||||||||| || |||| ||| || |||| || || | ||| || |||| ||||||| || |
|
|
| T |
4622754 |
gattggaacctagagatgccaagtgattatgtggagtttgatttaataatgaaggtaaaggtccaacggtatacaaagatgggaacattgaatagagcgc |
4622853 |
T |
|
| Q |
204 |
attcataacatcactctcaagttcatt |
230 |
Q |
| |
|
|||||| ||||| ||||||||||||| |
|
|
| T |
4622854 |
attcatcgcatcagtctcaagttcatt |
4622880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 4557647 - 4557742
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagatt |
107 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||||||| || || ||||| || ||||||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
4557647 |
cataactgtcatgctcccaaaattcacataaacaacggacctcggttccttggattcaagccaaccaagacacttgttatcttctttccaaagatt |
4557742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 4617544 - 4617651
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagag |
111 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||| |||| || || || ||||||||||| |||||||| | ||||||||||||||||| || || |
|
|
| T |
4617544 |
cataactgtaatgctgccgaaattcacataaacaactgatcccggctccttggattcaagccaatcaagacactctgtatcttctttccaaaggttggaa |
4617643 |
T |
|
| Q |
112 |
tctaaaga |
119 |
Q |
| |
|
|||||||| |
|
|
| T |
4617644 |
tctaaaga |
4617651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 4835571 - 4835531
Alignment:
| Q |
66 |
ttcaagccattcaagacatttagtatcttctttccaaagat |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
4835571 |
ttcaagccattcaagacattttgtatcttccttccaaagat |
4835531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 4592875 - 4592974
Alignment:
| Q |
131 |
tttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctcaagttcatt |
230 |
Q |
| |
|
|||||||| |||| |||| || |||| ||| || ||||| | ||| ||||||||||||| ||| ||| |||||| || |||||||||||||||||||| |
|
|
| T |
4592875 |
tttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaacatagaggagagagcatttattacatcactctcaagttcatt |
4592974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 4592765 - 4592842
Alignment:
| Q |
24 |
gctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcca |
101 |
Q |
| |
|
|||||| ||||| ||||||||||| || | | ||| || ||||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
4592765 |
gctgccgaaattcacataaacaacggaacccgattccttcgattcaagccatttaagacactcagtatcttctttcca |
4592842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 4568628 - 4568700
Alignment:
| Q |
74 |
attcaagacatttagtatcttctttccaaagattagagtctaaagatgtcaagtcattttgtggactttgatt |
146 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||||||| | ||||| ||||| ||| ||||||| |
|
|
| T |
4568628 |
attcaagacatttcatatcttctttccaaagattggaacctaaagaagccaagtgcttttggggattttgatt |
4568700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24103510 - 24103738
Alignment:
| Q |
1 |
ttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttcc |
100 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24103510 |
ttctctcgtgacataactgtgatgctaccaaaatttacataaacaactgatcttggttcttttgattcaagccactcaagacatttagtatcttctttcc |
24103609 |
T |
|
| Q |
101 |
aaagattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaa |
200 |
Q |
| |
|
||||||| || | |||||||| ||||| |||||||||||||||||||| ||||||||| ||||| ||||| ||||||| |||||| |||| ||| |||| |
|
|
| T |
24103610 |
aaagattggaatttaaagatgccaagtgattttgtggactttgatttaaaaaagaagcaaatgggccaatggtgtatatagaagggaacatagagtagag |
24103709 |
T |
|
| Q |
201 |
agcattcataacatcactctcaagttcat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24103710 |
agcattcataacatcactctcaagttcat |
24103738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 25 - 230
Target Start/End: Complemental strand, 20863440 - 20863235
Alignment:
| Q |
25 |
ctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagagtctaaagatgtca |
124 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||||| |||||||||||| ||||||||| ||| ||||||||||||||| | || |||||||| | || |
|
|
| T |
20863440 |
ctgccaaaatttacatatacaatagatcccggttctttcgattcaagccatgcaagacattcagtgtcttctttccaaagacttgaatctaaagacgcca |
20863341 |
T |
|
| Q |
125 |
agtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctcaag |
224 |
Q |
| |
|
||| ||| |||||||||||||||| ||||||| | || || ||||| |||||||||||||| |||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
20863340 |
agtgattctgtggactttgatttaaaaaagaaacaaaagggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaag |
20863241 |
T |
|
| Q |
225 |
ttcatt |
230 |
Q |
| |
|
||||| |
|
|
| T |
20863240 |
ctcatt |
20863235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 1674748 - 1674840
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaag |
104 |
Q |
| |
|
||||||| | ||||| || ||||| ||||||||||| |||| ||||| || |||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
1674748 |
cataacaataatgctaccgaaattcacataaacaaccgatcccggttcgttggattcaagccattcaagacactcagtatcttctttccaaag |
1674840 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 16685877 - 16685782
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagatt |
107 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||||||| || || ||||| || ||||||||||| |||||||| || ||||||| |||||||||||| |
|
|
| T |
16685877 |
cataactgtcatgctcccaaaattcacataaacaacggaactcggttccttggattcaagccaatcaagacacttggtatcttatttccaaagatt |
16685782 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 3086933 - 3087159
Alignment:
| Q |
3 |
ctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaa |
102 |
Q |
| |
|
|||| ||| |||||| || |||||||||||| | |||||||||||||| || | ||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
3086933 |
ctcttgagtcataactgtaatgctgccaaaactcacataaacaacagactcaagtccctttgattcaagccattcaagacacttggtatcttctttccaa |
3087032 |
T |
|
| Q |
103 |
agattagagtctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaag |
202 |
Q |
| |
|
||||| || ||||||||| ||||| ||| |||| | |||||||||| | |||| |||||| ||||| || |||| ||||| |||| |||||| | | |
|
|
| T |
3087033 |
agattggaacctaaagatgccaagtgattatgtgaagtttgatttagtagtgaaggtaatggtccaatggtatataatgaagggaacacagaatatagcg |
3087132 |
T |
|
| Q |
203 |
cattcataacatcactctcaagttcat |
229 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
3087133 |
cattcattacatcactctcaagttcat |
3087159 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 4296 - 4082
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagag |
111 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||||||| || ||||| || ||| ||||||| |||||||| || |||||||||||||||||||| || |
|
|
| T |
4296 |
cataactgtaatgcttccaaaattcacataaacaaccgactcaggttccttggatgcaagccactcaagacacttggtatcttctttccaaagattggaa |
4197 |
T |
|
| Q |
112 |
tctaaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataa |
211 |
Q |
| |
|
|||||||| ||| ||| |||||| ||||||||| || |||| ||| || ||||| || |||| |||||| |||| |||||||| |||||||| | |
|
|
| T |
4196 |
cctaaagat---tagtgattatgtggagtttgatttaataatgaagttaaaggtccaatggtatataaagaagggaacatagaatagagagcattcaata |
4100 |
T |
|
| Q |
212 |
catcactctcaagttcat |
229 |
Q |
| |
|
|| | ||||||||||||| |
|
|
| T |
4099 |
caccgctctcaagttcat |
4082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 3329 - 3110
Alignment:
| Q |
12 |
cataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagag |
111 |
Q |
| |
|
|||||| || |||||||| ||||| |||||||||||||| ||||| || ||||| |||||||||||||| || |||||||||||||||||||| || |
|
|
| T |
3329 |
cataactgtaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaa |
3230 |
T |
|
| Q |
112 |
tct-aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcata |
210 |
Q |
| |
|
|| |||||| ||||| ||| |||||| ||||| ||| || |||| |||||| || || |||||| || || |||| ||| | || ||||||| |
|
|
| T |
3229 |
cctaaaagattccaagtgattatgtggagtttgacttaataatgaaggtaatggtccgatactgtataatgatgggaacatagagtggagcgcattcagt |
3130 |
T |
|
| Q |
211 |
acatcactctcaagttcatt |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3129 |
acatcactctcaagttcatt |
3110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 1281627 - 1281743
Alignment:
| Q |
3 |
ctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaa |
102 |
Q |
| |
|
|||| ||| |||||| || ||||| || ||||| ||||||||||||||||| ||||| || ||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
1281627 |
ctctggagtcataactgtaatgcttccgaaattcacataaacaacagatctcggttccttcgattcaagccattgaagacactcgatatcttctttccaa |
1281726 |
T |
|
| Q |
103 |
agattagagtctaaaga |
119 |
Q |
| |
|
|| || || |||||||| |
|
|
| T |
1281727 |
aggttggaatctaaaga |
1281743 |
T |
|
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Target: scaffold0199 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 4 - 77
Alignment:
| Q |
31 |
aaatttacataaacaacagatcttggttcttttgattcaagccattcaagacatttagtatcttctttccaaag |
104 |
Q |
| |
|
||||| ||||||||||| |||| ||||| || |||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
4 |
aaattcacataaacaaccgatcccggttcgttggattcaagccattcaagacactcagtatcttctttccaaag |
77 |
T |
|
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