View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_low_5 (Length: 499)
Name: NF14579_low_5
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5464518 - 5464308
Alignment:
| Q |
1 |
gtgttcgaccaattgtgcctatgcctccaactgcagagtggtttaatatgattttcattattcaagcttaggtttacagataacaacttgtgtttgaata |
100 |
Q |
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| T |
5464518 |
gtgttcgaccaattgtgcctatgcctccaaatgcagagtggttgaatat-attttcattattcaagcttaggtttacagataacaacttgtgtttgaata |
5464420 |
T |
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| Q |
101 |
ttacggtccaacttacaagcttatggttacaaattattcaagctcaagcgacctacccacatatcagaaaa----gagtcatacccaatataatgtattg |
196 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
5464419 |
ttaaggtccaact----------gggttacaaattattcaagctcaagcgacctacccac--atcagaaaactatgagtcatacccaatataatgtattg |
5464332 |
T |
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| Q |
197 |
agaaaaaaggaaacattgatggaa |
220 |
Q |
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|||||||||||||||||||||||| |
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| T |
5464331 |
agaaaaaaggaaacattgatggaa |
5464308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 366 - 486
Target Start/End: Complemental strand, 5464177 - 5464057
Alignment:
| Q |
366 |
ttgacagcttccaacgcggtaattttcacaagatcctactggtgtgcgaaagctagcaaatttgattgatgatatgttttgtccattgccacatgacaag |
465 |
Q |
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| T |
5464177 |
ttgacagcttccaacgcggtaattttcacaagatcctagtggagtgccaaagctagcaaatttgattgatgatattttttgtccaataccacatgacaga |
5464078 |
T |
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| Q |
466 |
tgtgtttttggactcacaggt |
486 |
Q |
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| T |
5464077 |
tgtgtttttggactcacaggt |
5464057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 5464288 - 5464202
Alignment:
| Q |
284 |
catgtgtctaatttgtgtttgtctatagcaccctatc-actataaaaaagaaaccatcctagaaaaagaagtaaaagtaccttttga |
369 |
Q |
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| T |
5464288 |
catgtgtctaattagtgtttgtctataacaccctatccactataaaaaagaaaccatcctagaaaaagaagtaaaaataccttttga |
5464202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 367 - 486
Target Start/End: Complemental strand, 5455512 - 5455393
Alignment:
| Q |
367 |
tgacagcttccaacgcggtaattttcacaagatcctactggtgtgcgaaagctagcaaatttgattgatgatatgttttgtccattgccacatgacaagt |
466 |
Q |
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| T |
5455512 |
tgacagcttccttcgcggtagtttccacaagacccgactggagtgccaaagctagcaaatttgattgatgatattttttgtccaggaccacatgacaaat |
5455413 |
T |
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| Q |
467 |
gtgtttttggactcacaggt |
486 |
Q |
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| T |
5455412 |
gtgcttttggactcacaggt |
5455393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 5455888 - 5455726
Alignment:
| Q |
49 |
tgattttc-attattcaagcttaggtttacagataacaacttgtgtttgaatattacggtccaacttacaagcttatggttacaaattattcaagctcaa |
147 |
Q |
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|||||||| ||||||||| ||||||||||| |||||||||||||||| ||||||| |||| |||||||||||| |||||||||||||| | |||| | |
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| T |
5455888 |
tgattttctattattcaaacttaggtttaccaataacaacttgtgtttaaatattatagtccggcttacaagcttagggttacaaattatttaggctcga |
5455789 |
T |
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| Q |
148 |
gcgacctacccacatatcagaaaa----gagtcatacccaatataatgtattgagaaaaaagg |
206 |
Q |
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|||||||| |||| ||||| ||| ||||||||| ||||| || |||||||||||||||| |
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| T |
5455788 |
gcgacctagccactaatcagtaaactatgagtcatactcaatagaacgtattgagaaaaaagg |
5455726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 5455628 - 5455562
Alignment:
| Q |
284 |
catgtgtctaatttgtgtttgtctatagcaccctatc-actataaaaaagaaaccatcctagaaaaa |
349 |
Q |
| |
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| T |
5455628 |
catgtgtcaaattagtgtctggctagagcaccctatccacaataaaaaagaaaccatcctagaaaaa |
5455562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 2888804 - 2888865
Alignment:
| Q |
48 |
atgattttc-attattcaagcttaggtttacagataacaacttgtgtttgaatattacggtc |
108 |
Q |
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| T |
2888804 |
atgattttctattattcaagcttagagttacagattacaacttgtgtttaaataatacggtc |
2888865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 38726795 - 38726856
Alignment:
| Q |
57 |
attattcaagcttaggtttacagataacaacttgtgtttgaatattacggtccaacttacaa |
118 |
Q |
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||||||||| |||||| ||| |||| ||||||||||||| |||| | |||||||| |||||| |
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| T |
38726795 |
attattcaaacttagggttagagattacaacttgtgtttaaatacttcggtccaaattacaa |
38726856 |
T |
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