View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_low_6 (Length: 486)
Name: NF14579_low_6
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 31648738 - 31648283
Alignment:
| Q |
13 |
gaagaatatcgataaagacgtcattagattgactaaagaggtggaagacaaaagtatggaaatttcaacattaaagcaagaagtagaaaccatgcnnnnn |
112 |
Q |
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| T |
31648738 |
gaagaaaatcgataaagacgtcattagattgactaaagaggtggaagacaaaagtatggaaatttcaacattgaagcaagaagtagaaaccatgcaaaaa |
31648639 |
T |
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| Q |
113 |
nnntatgaagtgcaatgctcaaagttagaagaaaaaactaaggatgctaaaggtgaattgaaccagaaatcacaagaatatgagcttctattggaaaagt |
212 |
Q |
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| T |
31648638 |
aaatatgaagtgcaatgctcaaagttagaagaaaaaactaaggatgctaaaggtgaattgaaccagaaatcacaagaatatgagcttctattggaaaagt |
31648539 |
T |
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| Q |
213 |
taagagataaggttaaagagagtgaagctattaatgaggcaaaatatcagaaatggaacatgaaacataacctaatgcagaatgctatgaattttcaatt |
312 |
Q |
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| T |
31648538 |
taagagataaggttaaagagagtgaagctattaatgaggcaaaatatcagaaatggaacatgaaacataacctaatgcagaatgctatgaattttcaatt |
31648439 |
T |
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| Q |
313 |
taattccataaaggtaaacttatatattttaggttttaatatatcttttgttcctgcaaatatatcatattcaaacctatatttatgatgtaaaatatta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31648438 |
taattccataaaggtaaacttatatattttaggttttaatatatcttttgctcctgcaaatatatcatattcaaacctatatttatgatgtaaaatatta |
31648339 |
T |
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| Q |
413 |
aaatgttccattgaattttcatccagcaattgaaattgtcttgggaaacaattaag |
468 |
Q |
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| T |
31648338 |
aaaagttccattgaattttcatccagcaattgaaattgtcttgggaaacaattaag |
31648283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 31648800 - 31648752
Alignment:
| Q |
14 |
aagaatatcgataaagacgtcattagattgactaaagaggtggaagaca |
62 |
Q |
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| T |
31648800 |
aagaaaattgataaagaagttattagattgactaaagaagtggaagaca |
31648752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 43879274 - 43879354
Alignment:
| Q |
116 |
tatgaagtgcaatgctcaaagttagaagaaaaaactaaggatgctaaaggtgaattgaaccagaaatcacaagaatatgag |
196 |
Q |
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||||||| | |||||||| |||| |||||| |||| | ||||||||||| ||||||| ||||| || |||||||||||| |
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| T |
43879274 |
tatgaagcgaaatgctcacagttggaagaagaaaccagggatgctaaagcagaattgagacagaagtctcaagaatatgag |
43879354 |
T |
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