View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14579_low_9 (Length: 454)

Name: NF14579_low_9
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14579_low_9
NF14579_low_9
[»] chr1 (4 HSPs)
chr1 (110-427)||(47805803-47806122)
chr1 (17-80)||(47806301-47806364)
chr1 (229-329)||(52227383-52227484)
chr1 (16-72)||(52228128-52228184)
[»] chr8 (3 HSPs)
chr8 (251-435)||(29350162-29350335)
chr8 (106-165)||(29346702-29346761)
chr8 (54-107)||(29346513-29346562)
[»] chr5 (2 HSPs)
chr5 (274-394)||(19985269-19985389)
chr5 (391-435)||(19985416-19985458)
[»] chr7 (1 HSPs)
chr7 (120-199)||(20276855-20276934)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 110 - 427
Target Start/End: Complemental strand, 47806122 - 47805803
Alignment:
Q  110 agcaattcactcacgcagttaatgcatatgttatatacaactatttaagcagaattacaacact--cattaaactataataaacaacggatactgtgttt 207  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||  ||  ||| || | |||||||||||||||||| ||||||    
T  47806122 agcaattcacacgtgcagttaatgcatatgttatatacaactatttaagcagaattacaatgctatcatgaagcaataataaacaacggataccgtgttt 47806023  T
Q  208 acaattcaaggacacaagcactgtatttcacaaaggacataatcagattattctaaagcatcatgttagagatcccattaaagcttatatacaccaattt 307  Q
    | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  47806022 ataattcaaggacacaagccctgtatttcacaaatgacataatcagattattctaaagcatcatgttagagatctcattaaagctgatatacaccgattt 47805923  T
Q  308 atggtcacagcaaaatatgaagnnnnnnncaatgaaatgcattgacgcagccaaaagcaaaaactacaaagatacattggagcatatggttataacaatg 407  Q
    ||||||||| |||||||||| |       ||||||||||||||||  ||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||    
T  47805922 atggtcacaacaaaatatgatgaaaaaaacaatgaaatgcattgatccagccaaaagcaaaaaccacaaagatacattggagtatatgtttacaacaatg 47805823  T
Q  408 aactttaacataaattatac 427  Q
    |||||||||| |||||||||    
T  47805822 aactttaacaaaaattatac 47805803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 47806364 - 47806301
Alignment:
Q  17 cagagaataagattacaaggaaagactaaactcaagtaagactgaatatccaaagaataatcaa 80  Q
    ||||||||||| |||||||||||||  |||||||||||||| |||||||||||||||| |||||    
T  47806364 cagagaataaggttacaaggaaagatcaaactcaagtaagattgaatatccaaagaatcatcaa 47806301  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 52227484 - 52227383
Alignment:
Q  229 tgtatttcacaaaggacataatcagattattctaaagcatcatgttagagatcccattaaagcttatat-acaccaatttatggtcacagcaaaatatga 327  Q
    ||||||||| | |||||| ||||| |||| ||||||||||| | ||||||||| ||||||| || |||| ||||||||| |||||||||  |||| ||||    
T  52227484 tgtatttcagacaggacaaaatcaaattactctaaagcatcgtattagagatctcattaaaactaatataacaccaattgatggtcacaataaaacatga 52227385  T
Q  328 ag 329  Q
    ||    
T  52227384 ag 52227383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 52228184 - 52228128
Alignment:
Q  16 gcagagaataagattacaaggaaagactaaactcaagtaagactgaatatccaaaga 72  Q
    |||||||| ||| |||||||||||||||||||||| |||||| ||||||||| ||||    
T  52228184 gcagagaaaaaggttacaaggaaagactaaactcatgtaagattgaatatcctaaga 52228128  T

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Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 251 - 435
Target Start/End: Original strand, 29350162 - 29350335
Alignment:
Q  251 cagattattctaaagcatcatgttagagatcccattaaagcttatatacaccaatttatggtcacagcaaaatatgaagnnnnnnncaatgaaatgcatt 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||       ||||||||||||||    
T  29350162 cagattattctaaagcatcatgttagagatcccattaaagcttatatacaccaatttat--------------atgaagaaaaaaacaatgaaatgcatt 29350247  T
Q  351 gacgcagccaaaagcaaaaactacaaagatacattggagcatatggttat---aacaatgaactttaacataaattatacactattgt 435  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||    
T  29350248 gacgcagccaaaagcaaaaaccacaaagatacattggagcatatgtttataacaacaatgaactttaacataaattatacactattgt 29350335  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 29346702 - 29346761
Alignment:
Q  106 ttgtagcaattcactcacgcagttaatgcatatgttatatacaactatttaagcagaatt 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29346702 ttgtagcaattcactcacgcagttaatgcatatgttatatacaactatttaagcagaatt 29346761  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 29346513 - 29346562
Alignment:
Q  54 aagactgaatatccaaagaataatcaagctgaatatatacacccaatggtgatt 107  Q
    |||| |||||||||||||||||||||||||||    ||||||||||||||||||    
T  29346513 aagattgaatatccaaagaataatcaagctga----atacacccaatggtgatt 29346562  T

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Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 274 - 394
Target Start/End: Original strand, 19985269 - 19985389
Alignment:
Q  274 tagagatcccattaaagcttatatacaccaatttatggtcacagcaaaatatgaagnnnnnnncaatgaaatgcattgacgcagccaaaagcaaaaacta 373  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||       ||| ||||||||||||||||||||||||||||||| |    
T  19985269 tagagatctcattaaagcttatatactccaatttatggtcacggcaaaatatgaagaaaaaaacaacgaaatgcattgacgcagccaaaagcaaaaacca 19985368  T
Q  374 caaagatacattggagcatat 394  Q
    |||||||||||||||||||||    
T  19985369 caaagatacattggagcatat 19985389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 19985416 - 19985458
Alignment:
Q  391 atatggttataacaatgaactttaacataaattatacactattgt 435  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||    
T  19985416 atatgtttataacaatgaact--aacataaattatacactattgt 19985458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 20276934 - 20276855
Alignment:
Q  120 tcacgcagttaatgcatatgttatatacaactatttaagcagaattacaacactcattaaactataataaacaacggata 199  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  20276934 tcacgcagttaatgcatatgttatatacaaatattcaagcagaattacaacactcatgaaactataataaacaacggata 20276855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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