View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457R-Insertion-1 (Length: 1009)

Name: NF1457R-Insertion-1
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457R-Insertion-1
NF1457R-Insertion-1
[»] chr6 (4 HSPs)
chr6 (358-846)||(10037076-10037562)
chr6 (39-360)||(10036577-10036898)
chr6 (367-435)||(26373075-26373144)
chr6 (362-433)||(7180705-7180776)
[»] chr7 (4 HSPs)
chr7 (576-610)||(47132275-47132309)
chr7 (362-433)||(25314032-25314104)
chr7 (384-434)||(7245950-7246000)
chr7 (384-438)||(44247034-44247088)
[»] chr4 (3 HSPs)
chr4 (362-435)||(51255389-51255462)
chr4 (369-435)||(13298523-13298590)
chr4 (367-435)||(30617269-30617337)
[»] chr5 (2 HSPs)
chr5 (393-448)||(17755220-17755275)
chr5 (362-434)||(33979532-33979605)
[»] chr2 (2 HSPs)
chr2 (385-448)||(3233756-3233819)
chr2 (374-419)||(32562372-32562417)
[»] chr1 (1 HSPs)
chr1 (390-433)||(32470260-32470303)
[»] chr8 (1 HSPs)
chr8 (362-434)||(27483038-27483111)


Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 358 - 846
Target Start/End: Original strand, 10037076 - 10037562
Alignment:
Q  358 actatataacatagcgaaatttgaacaatcgctattattctgtgatacgctattcagtacaaagtgttgttaaatagtagcactatagcaccatcgtgta 457  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||  |||||||    
T  10037076 actatataacataacgaaatttgaacaatcgctattattctttgatatgctattcagtacgaagtgttgttaaatagtggcactatagcactgtcgtgta 10037175  T
Q  458 gtagaatttgaacgatccactattttctgcaattcgtaataggcaacactgtacttactcttttctcactttcaatatgtagattccactaagtggagtt 557  Q
    ||||||||||||| |||||||||||||||||||||  ||| |  ||| ||||| |||||| ||||||||||  |||||||||||||||||||||||||||    
T  10037176 gtagaatttgaacaatccactattttctgcaattcacaattgaaaaccctgtaattactcctttctcacttcaaatatgtagattccactaagtggagtt 10037275  T
Q  558 cattcgatactcgggagagctgttgttgttcatgctgatcctgatgatcttggaagaggtaagaatgtaaatgtttggaccgagaatcaatgaacttgtt 657  Q
    ||||| |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| ||| | ||| |||| ||| ||||||||||||||||||    
T  10037276 cattccatactcggaagggctgtcgttgttcatgccgatcctgatgatcttggaagaggtaa-aat-ttaatttttgaaccaagaatcaatgaacttgtt 10037373  T
Q  658 taattaggcttcctcatttttccactttgaaacgtagcttctgttttcctctattcttatagtttttatacagtaactcattggagtagtttttctatga 757  Q
    | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10037374 tgattaggcttcctcttttttccactttgaaacgtagattctgttttcctctattcttatagtttttatacagtaactcattggagtagtttttctatga 10037473  T
Q  758 taaagatgtactgaattgaatttgaatacattatttcttgatatgaaaagcttagagtgcaaattacttgtatgatccaagttgataaa 846  Q
    ||||| | |||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||    
T  10037474 taaagctatactcaattgaatttgagtacattatttcttgatattaaaagcttaaagtgcaaattacttgtatgttccaagttgataaa 10037562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 39 - 360
Target Start/End: Original strand, 10036577 - 10036898
Alignment:
Q  39 tgattatttcattaaaaataagataatcaaacatgcaagtgtttcgattcaattttggctttgacttctttacctcaggtcctcacttcaatccactcaa 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10036577 tgattatttcattaaaaataagataatcaaacatgcaagtgtttcgattcaattttggctttgacttctttacctcaggtcctcacttcaatccactcaa 10036676  T
Q  139 gaaggatcacggagcttctaccgatgatgagcgacatgccggtgatttgggtaacattgttgcaggccctgatggtattacattctttcttcttcgtctt 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10036677 gaaggatcacggagctcctaccgatgatgagcgacatgccggtgatttgggtaacattgttgcaggccctgatggtattacattctttcttcttcgtctt 10036776  T
Q  239 ttttatatatttattttgagattttaacaatgtataagttgtcccccgggaaatctccttgagagttttctgttttgcaggagttgctgagatttctatc 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10036777 ttttatatatttattttgagattttaacaatgtataagttgtcccctgggaaatctccttgagagttttctgttttgcaggagttgctgagatttctatc 10036876  T
Q  339 agagatggaaaggtacagaact 360  Q
    ||||||||||||||| ||||||    
T  10036877 agagatggaaaggtaaagaact 10036898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 367 - 435
Target Start/End: Original strand, 26373075 - 26373144
Alignment:
Q  367 catagcgaaatttgaacaa-tcgctattattctgtgatacgctattcagtacaaagtgttgttaaatagt 435  Q
    ||||| |||| |||||||| || ||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  26373075 catagtgaaaattgaacaactcactattgttctgtgatacgctatttagtacaaagtgttgtcaaatagt 26373144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 433
Target Start/End: Complemental strand, 7180776 - 7180705
Alignment:
Q  362 tataacatagcgaaatttgaacaatcgctattattctgtgatacgctattcagtacaaagtgttgttaaata 433  Q
    |||||||||||| ||||  |  ||| |||||| ||||||||||| ||||| |||||||||| ||||||||||    
T  7180776 tataacatagcggaattgaataaattgctattgttctgtgatacactatttagtacaaagtattgttaaata 7180705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 576 - 610
Target Start/End: Original strand, 47132275 - 47132309
Alignment:
Q  576 gctgttgttgttcatgctgatcctgatgatcttgg 610  Q
    |||||||||||||||||||||||||||||||||||    
T  47132275 gctgttgttgttcatgctgatcctgatgatcttgg 47132309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 362 - 433
Target Start/End: Complemental strand, 25314104 - 25314032
Alignment:
Q  362 tataacatagcgaaatttgaacaa-tcgctattattctgtgatacgctattcagtacaaagtgttgttaaata 433  Q
    |||| ||||| | ||||||||||| ||| |||| ||||||||||| |||||  ||||||||||||||||||||    
T  25314104 tatagcatagaggaatttgaacaaatcgttattgttctgtgatacactatttggtacaaagtgttgttaaata 25314032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 7246000 - 7245950
Alignment:
Q  384 aatcgctattattctgtgatacgctattcagtacaaagtgttgttaaatag 434  Q
    |||||||||| || || ||||||||||| ||||||||||||||| ||||||    
T  7246000 aatcgctattcttttgcgatacgctatttagtacaaagtgttgtcaaatag 7245950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 44247088 - 44247034
Alignment:
Q  384 aatcgctattattctgtgatacgctattcagtacaaagtgttgttaaatagtagc 438  Q
    |||| ||||| ||| ||||||||| |||  |||||||||||||||||||||||||    
T  44247088 aatcactattgttccgtgatacgccattgtgtacaaagtgttgttaaatagtagc 44247034  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 435
Target Start/End: Complemental strand, 51255462 - 51255389
Alignment:
Q  362 tataacatagcgaaatttgaacaatcgctattattctgtgatacgctattcagtacaaagtgttgttaaatagt 435  Q
    |||| ||||||  ||||||||||||| || ||| |||||||||||||  | ||||||||||||||| |||||||    
T  51255462 tatatcatagcagaatttgaacaatcccttttactctgtgatacgctccttagtacaaagtgttgtcaaatagt 51255389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 13298523 - 13298590
Alignment:
Q  369 tagcgaaatttgaacaa-tcgctattattctgtgatacgctattcagtacaaagtgttgttaaatagt 435  Q
    ||||| ||||||||||| || ||||| |||||||||| |||||| ||||||||||| ||| |||||||    
T  13298523 tagcggaatttgaacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaatagt 13298590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 367 - 435
Target Start/End: Complemental strand, 30617337 - 30617269
Alignment:
Q  367 catagcgaaatttgaacaa-tcgctattattctgtgatacgctattcagtacaaagtgttgttaaatagt 435  Q
    ||||||| ||||||||||| |||||| | ||||||||||||||||| |||||||| | |||| |||||||    
T  30617337 catagcggaatttgaacaaatcgctagtgttctgtgatacgctatt-agtacaaaatattgtgaaatagt 30617269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 17755275 - 17755220
Alignment:
Q  393 tattctgtgatacgctattcagtacaaagtgttgttaaatagtagcactatagcac 448  Q
    |||| ||| |||||||||| ||||||||||||||| ||||||  ||||||||||||    
T  17755275 tattatgtaatacgctatttagtacaaagtgttgtcaaatagaggcactatagcac 17755220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 362 - 434
Target Start/End: Complemental strand, 33979605 - 33979532
Alignment:
Q  362 tataacatagcgaaatttgaacaatcg-ctattattctgtgatacgctattcagtacaaagtgttgttaaatag 434  Q
    |||| ||||| ||||||||||||| |  ||||| |||||||||||||| ||||||| ||||| |||| ||||||    
T  33979605 tatatcatagggaaatttgaacaaaccactattgttctgtgatacgctgttcagtaaaaagttttgtcaaatag 33979532  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 448
Target Start/End: Complemental strand, 3233819 - 3233756
Alignment:
Q  385 atcgctattattctgtgatacgctattcagtacaaagtgttgttaaatagtagcactatagcac 448  Q
    ||||||||| |||||  |||| ||||| |||||||||||||||| |||||  ||||||||||||    
T  3233819 atcgctattgttctgctatacactatttagtacaaagtgttgtttaatagcggcactatagcac 3233756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 32562372 - 32562417
Alignment:
Q  374 aaatttgaacaatcgctattattctgtgatacgctattcagtacaa 419  Q
    ||||||||| |||||||||||||||| ||||| ||||| |||||||    
T  32562372 aaatttgaaaaatcgctattattctgcgatacactatttagtacaa 32562417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 433
Target Start/End: Complemental strand, 32470303 - 32470260
Alignment:
Q  390 tattattctgtgatacgctattcagtacaaagtgttgttaaata 433  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||    
T  32470303 tattattctgtgatgcgctattcagtacgaagtgttgtcaaata 32470260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 27483038 - 27483111
Alignment:
Q  362 tataacatagcgaaatttgaacaatc-gctattattctgtgatacgctattcagtacaaagtgttgttaaatag 434  Q
    |||||| ||| | ||||||||||| | |||||||||||| |||||||||| ||||||||| | |||| ||||||    
T  27483038 tataacgtagaggaatttgaacaaaccgctattattctgagatacgctatccagtacaaaatattgtcaaatag 27483111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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