View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457R-Insertion-15 (Length: 178)
Name: NF1457R-Insertion-15
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457R-Insertion-15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 40528127 - 40528298
Alignment:
| Q |
7 |
cagaaatagtttcagataatgccctttgacatctttctaggacagaaattgcagcagtcaaatcaccacgttctgcttcgactctagcctcagccattgc |
106 |
Q |
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| T |
40528127 |
cagaaatagtttcagataatgccctttgacatctttctaggacagaaattgcagcagtcaaatcaccacgttctgcttcgactctagcctcagccattgc |
40528226 |
T |
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| Q |
107 |
ctcagtagcttgaagtctattcctttgcctatctacttctattgatacaacttgatctctagccacattagg |
178 |
Q |
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| T |
40528227 |
ctcagtagcttgaagtctattcctttgcctatctacttctattgatacaacttgatctctagccacattagg |
40528298 |
T |
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Target: chr8 (Bit Score: 82; Significance: 5e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 35366124 - 35366011
Alignment:
| Q |
64 |
tcaaatcaccacgttctgcttcgactctagcctcagccattgcctcagtagcttgaagtctattcctttgcctatctacttctattgatacaacttgatc |
163 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||| |||||||||||||||| |||||||| ||||||| |
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| T |
35366124 |
tcaaatcaccacgttctgcttcgactctagcctcaaccattgtctcagtagtttaaagtctattcatttgcctatctacttcggttgatacaccttgatc |
35366025 |
T |
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| Q |
164 |
tctagccacattag |
177 |
Q |
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| T |
35366024 |
tctagccacattag |
35366011 |
T |
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