View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457R-Insertion-18 (Length: 132)

Name: NF1457R-Insertion-18
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457R-Insertion-18
NF1457R-Insertion-18
[»] chr4 (1 HSPs)
chr4 (9-132)||(9050938-9051061)
[»] chr5 (3 HSPs)
chr5 (10-66)||(17190663-17190719)
chr5 (10-66)||(30892178-30892234)
chr5 (15-54)||(32153759-32153798)
[»] chr1 (2 HSPs)
chr1 (15-65)||(12876057-12876107)
chr1 (15-54)||(31602135-31602174)
[»] chr6 (1 HSPs)
chr6 (10-54)||(7447632-7447676)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 2e-47; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 9051061 - 9050938
Alignment:
Q  9 agtactacactttagaaatggatcccacgtaaattggtgagacccatataaatttcacgtattgaaatagtgaatgttaaaaagtattaaaaagagagtg 108  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||||| ||||    
T  9051061 agtactacattttagaaatggatcccacgtaaattggtgagacccatataaatttcacatattgaaatagtaaatgttaaagagtactaaaaagatagtg 9050962  T
Q  109 tttcgaacatttctatccggtcaa 132  Q
    ||||||||||||||||| ||||||    
T  9050961 tttcgaacatttctatctggtcaa 9050938  T

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Target: chr5 (Bit Score: 33; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 17190719 - 17190663
Alignment:
Q  10 gtactacactttagaaatggatcccacgtaaattggtgagacccatataaatttcac 66  Q
    |||| |||| ||||||||||||||||| |||| |||||||||||| |||| ||||||    
T  17190719 gtaccacacattagaaatggatcccacataaagtggtgagacccacataagtttcac 17190663  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 30892178 - 30892234
Alignment:
Q  10 gtactacactttagaaatggatcccacgtaaattggtgagacccatataaatttcac 66  Q
    |||| |||| ||||||||||||||||| |||| ||||||||| ||||| | ||||||    
T  30892178 gtaccacacattagaaatggatcccacataaaatggtgagactcatatgagtttcac 30892234  T

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Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 32153798 - 32153759
Alignment:
Q  15 acactttagaaatggatcccacgtaaattggtgagaccca 54  Q
    ||||||| |||||||||||||| |||| ||||||||||||    
T  32153798 acactttggaaatggatcccacataaagtggtgagaccca 32153759  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 12876057 - 12876107
Alignment:
Q  15 acactttagaaatggatcccacgtaaattggtgagacccatataaatttca 65  Q
    |||||||||| ||||||||||| |||| |||||||| ||| ||||||||||    
T  12876057 acactttagacatggatcccacataaagtggtgagatccacataaatttca 12876107  T

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Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 31602135 - 31602174
Alignment:
Q  15 acactttagaaatggatcccacgtaaattggtgagaccca 54  Q
    ||||||| |||||||||||||| |||| ||||||||||||    
T  31602135 acactttggaaatggatcccacctaaagtggtgagaccca 31602174  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 7447676 - 7447632
Alignment:
Q  10 gtactacactttagaaatggatcccacgtaaattggtgagaccca 54  Q
    |||| |||| ||||||||||||||||| |||| ||||||||||||    
T  7447676 gtaccacacattagaaatggatcccacataaagtggtgagaccca 7447632  T

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