View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457R-Insertion-2 (Length: 825)

Name: NF1457R-Insertion-2
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457R-Insertion-2
NF1457R-Insertion-2
[»] chr6 (13 HSPs)
chr6 (524-823)||(31111170-31111475)
chr6 (9-223)||(31110464-31110678)
chr6 (27-147)||(31080594-31080714)
chr6 (215-320)||(31110860-31110959)
chr6 (21-157)||(31056714-31056851)
chr6 (32-149)||(31035473-31035590)
chr6 (521-611)||(31057186-31057276)
chr6 (634-744)||(31104241-31104353)
chr6 (80-149)||(31045951-31046020)
chr6 (642-700)||(31035739-31035797)
chr6 (65-149)||(31027095-31027179)
chr6 (643-679)||(31035868-31035904)
chr6 (718-810)||(31057392-31057485)
[»] scaffold0202 (1 HSPs)
scaffold0202 (26-149)||(4985-5109)
[»] scaffold0018 (1 HSPs)
scaffold0018 (80-149)||(170710-170779)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 524 - 823
Target Start/End: Original strand, 31111170 - 31111475
Alignment:
Q  524 acttgggtcctttatcttcttattttttaaataaatattttcattgnnnnnnn-tacaacctagaaaaaataaataattttcttcaaattcatcttcata 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  31111170 acttgggtcctttatcttcttattttttaaataaatattttcattgaaaaaaaatacaacctagaaaaaataaataattttcttcaaattcatcttcata 31111269  T
Q  623 gttaatcttcctcatcctctttttcttcaaacctataaaattcaatcaaaatcttaaatctccacactctattggctc-cataaaaatc-agaaaaaacc 720  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | ||||||| ||||||||||    
T  31111270 gtcaatcttcctcatcctctttttcttcaaacctataaaattcaatcaaaatcttaaatctccacattctattggctcaaaaaaaaatcaagaaaaaacc 31111369  T
Q  721 aagattacatattttcatcaacttccctcaaaacattcatcttcaacc-aaaatttgaagaaataatatgtaaatctagaacccacaaaaa--cctcgat 817  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  31111370 aagattacatattttcatcaacttccctcaaaacattcatcttcaaccaaaaatttgaagaaataatatgtagatctagaacccacaaaaaaccctcgat 31111469  T
Q  818 gcattc 823  Q
    ||||||    
T  31111470 gcattc 31111475  T

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Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 31110464 - 31110678
Alignment:
Q  9 cttcggtcgtaacttccgcatgagtttagacttgaaacttcggttttctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31110464 cttcggtcgtaacttccgcatgagtttagacttgaaacttcggttttctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaa 31110563  T
Q  109 acatgtatgaatgtttacctataaaataagggtgtatatcagatattaatacatataacaactgggacccaaattcaatttgttgttgtctcccaaaatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  31110564 acatgtatgaatgtttacctataaaataagggtgtatatcagatattaatacatataacaactaggacccaaattcaaattgttgttgtcccccaaaatt 31110663  T
Q  209 tgactattttataac 223  Q
    |||||||||||||||    
T  31110664 tgactattttataac 31110678  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 31080594 - 31080714
Alignment:
Q  27 catgagtttagacttgaaacttcggttttctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttac 126  Q
    ||||||||||||||| |||||| |||||||||||||  ||||||||| || ||||||| |||||||| ||||||||||||||||||| | ||| ||||||    
T  31080594 catgagtttagacttaaaactttggttttctcttcaaacatgtagtataccacaacaagtcccacatagagtatgtgttaaaacatgcacgaaggtttac 31080693  T
Q  127 ctataaaataagggtgtatat 147  Q
    |||||||||||| ||||||||    
T  31080694 ctataaaataagagtgtatat 31080714  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 31110860 - 31110959
Alignment:
Q  215 ttttataacatgtcattgttgtggttgtttgttgttgggctttacaagtgattgcattttataaatgccttgtaattgtaagatacaacaacagttacaa 314  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  31110860 ttttataacatgtcattgttgtggttgt----tgttgggctttacaagtgattgcatttt-taaatgccttgt-attgtaagatacaacaacagttacaa 31110953  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 31056714 - 31056851
Alignment:
Q  21 cttccgcatgagtttagacttgaaacttcggtttt-ctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaa 119  Q
    |||| ||||||||||||||| ||||||| | |||| |||| || |||||||||| || ||||||| |||||||||||||||||||||||||| | | |||    
T  31056714 cttctgcatgagtttagactcgaaactttgatttttctctacaagcatgtagtataccacaacaagtcccacatcgagtatgtgttaaaacaggcaggaa 31056813  T
Q  120 tgtttacctataaaataagggtgtatatcagatattaa 157  Q
     |||||| |||||||||||  ||||||||| |||||||    
T  31056814 ggtttacatataaaataagattgtatatcaaatattaa 31056851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 31035473 - 31035590
Alignment:
Q  32 gtttagacttgaaacttcggttttctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctata 131  Q
    ||||| ||||||||||| |||||||||||||  ||||||||| || ||||||| | ||||||||||||||||||||||||   ||||| |||| ||||||    
T  31035473 gtttaaacttgaaacttaggttttctcttcaaacatgtagtataccacaacaagttccacatcgagtatgtgttaaaacagtcatgaaggttttcctata 31035572  T
Q  132 aaataagggtgtatatca 149  Q
    ||| ||| ||||||||||    
T  31035573 aaagaagagtgtatatca 31035590  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 521 - 611
Target Start/End: Original strand, 31057186 - 31057276
Alignment:
Q  521 ctcacttgggtcctttatcttcttattttttaaataaatattttcattgnnnnnnntacaacctagaaaaaataaataattttcttcaaat 611  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||       |  |||||||||||||||||| |||||||||||||    
T  31057186 ctcacttggatcctttatcttcttatcctttaaataaatattttcattgaaacagatcaaacctagaaaaaataaattattttcttcaaat 31057276  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 634 - 744
Target Start/End: Original strand, 31104241 - 31104353
Alignment:
Q  634 tcatcctctttttcttcaaacctataaaattcaatcaaaatcttaaatctccacactctattggctc-cataaaaatc-agaaaaaaccaagattacata 731  Q
    |||||||||||||||||||||| |||||||||||||||||||  ||| ||||| |   ||||| |||  ||||||||| |||||| ||||| ||||||||    
T  31104241 tcatcctctttttcttcaaacccataaaattcaatcaaaatcccaaacctccaaatcgtattgtctcaaataaaaatctagaaaacaccaacattacata 31104340  T
Q  732 ttttcatcaactt 744  Q
    | |||||||||||    
T  31104341 tcttcatcaactt 31104353  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 31045951 - 31046020
Alignment:
Q  80 aacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca 149  Q
    ||||| |||||||||||||||||||||||||| | |||||  ||| ||||||||||||| ||||||||||    
T  31045951 aacaagtcccacatcgagtatgtgttaaaacaggcatgaagatttccctataaaataagagtgtatatca 31046020  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 642 - 700
Target Start/End: Original strand, 31035739 - 31035797
Alignment:
Q  642 tttttcttcaaacctataaaattcaatcaaaatcttaaatctccacactctattggctc 700  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| | | |||||||||    
T  31035739 tttttcttcaaacctataaaattcaatcaaaatctcagatctccaaattgtattggctc 31035797  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 31027095 - 31027179
Alignment:
Q  65 catgtagtaaacaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca 149  Q
    ||||||||| || ||||| | || ||||||||||||||||||||||| | |   | |||||||||||||||||| ||||||||||    
T  31027095 catgtagtataccacaactagtctcacatcgagtatgtgttaaaacaggcacagaggtttacctataaaataagagtgtatatca 31027179  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 643 - 679
Target Start/End: Original strand, 31035868 - 31035904
Alignment:
Q  643 ttttcttcaaacctataaaattcaatcaaaatcttaa 679  Q
    |||||||||||||||||||||||||||||||||||||    
T  31035868 ttttcttcaaacctataaaattcaatcaaaatcttaa 31035904  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 718 - 810
Target Start/End: Original strand, 31057392 - 31057485
Alignment:
Q  718 accaagattacatattttcatcaacttccctcaaaacattcatcttcaacc-aaaatttgaagaaataatatgtaaatctagaacccacaaaaa 810  Q
    ||||| ||||||||| ||||||||||| ||||  ||||||||| ||||||| | || ||||||||| ||||  || |||||||||||| |||||    
T  31057392 accaacattacatatcttcatcaactttcctcttaacattcattttcaacctataaattgaagaaagaatacatagatctagaacccataaaaa 31057485  T

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Target: scaffold0202 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 5109 - 4985
Alignment:
Q  26 gcatgagtttagacttgaaacttcggttttctcttcaggcatgtagtaa-acaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgttt 124  Q
    ||||||||||||||||| ||||| ||||||||||| ||| ||| ||||| || ||||||| |||||||| ||||||  ||||||||| | |   | ||||    
T  5109 gcatgagtttagacttgtaactttggttttctcttaaggtatgcagtaataccacaacaagtcccacatagagtatacgttaaaacaggcactgaggttt 5010  T
Q  125 acctataaaataagggtgtatatca 149  Q
    | |||||||||||| ||||||||||    
T  5009 atctataaaataagagtgtatatca 4985  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 170779 - 170710
Alignment:
Q  80 aacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca 149  Q
    ||||| ||||||||||||||| |||||||||||  | ||| |||||||||||||||||| |||| |||||    
T  170779 aacaagtcccacatcgagtatatgttaaaacatagaagaaggtttacctataaaataagagtgtgtatca 170710  T

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