View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457R-Insertion-21 (Length: 79)

Name: NF1457R-Insertion-21
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457R-Insertion-21
NF1457R-Insertion-21
[»] chr4 (9 HSPs)
chr4 (9-79)||(11467291-11467361)
chr4 (9-79)||(11487838-11487908)
chr4 (9-79)||(11524512-11524582)
chr4 (9-79)||(11508297-11508367)
chr4 (11-79)||(11441525-11441593)
chr4 (9-79)||(11444399-11444469)
chr4 (9-79)||(11548639-11548709)
chr4 (29-79)||(34776949-34776999)
chr4 (29-79)||(34785115-34785165)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 2e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-30
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 11467291 - 11467361
Alignment:
Q  9 acttgaagccgcatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattct 79  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11467291 acttgaagccacatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattct 11467361  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 11487908 - 11487838
Alignment:
Q  9 acttgaagccgcatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattct 79  Q
    |||||||||| ||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||    
T  11487908 acttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattct 11487838  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 11524582 - 11524512
Alignment:
Q  9 acttgaagccgcatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattct 79  Q
    |||||||||| ||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||    
T  11524582 acttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattct 11524512  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 11508367 - 11508297
Alignment:
Q  9 acttgaagccgcatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattct 79  Q
    ||||||| |||||||| || |||||||| ||||| ||||||||||| ||  |||||||||||| |||||||    
T  11508367 acttgaaaccgcatataggtgtaatcttatagctgctgaaacctgcgtcgaatatgagtttctcccattct 11508297  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 11441525 - 11441593
Alignment:
Q  11 ttgaagccgcatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattct 79  Q
    |||||||||||||| || |||||||| ||||| ||||| ||||| ||  |||||||||||| |||||||    
T  11441525 ttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattct 11441593  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 11444399 - 11444469
Alignment:
Q  9 acttgaagccgcatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattct 79  Q
    |||||||||||||||| ||||||||||| ||||| ||||| ||||| ||   ||| ||||||| |||||||    
T  11444399 acttgaagccgcatataggagtaatcttatagctgctgaagcctgcgtcgagtataagtttctcccattct 11444469  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 11548709 - 11548639
Alignment:
Q  9 acttgaagccgcatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattct 79  Q
    |||||||||||||||| ||||||||||| ||||| ||||| ||||| ||   ||| ||||||| |||||||    
T  11548709 acttgaagccgcatataggagtaatcttatagctgctgaagcctgcgtcgagtataagtttctcccattct 11548639  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 34776999 - 34776949
Alignment:
Q  29 gtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattct 79  Q
    ||||| |||||||| || ||||||||||||||||||||||| | |||||||    
T  34776999 gtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattct 34776949  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 34785165 - 34785115
Alignment:
Q  29 gtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattct 79  Q
    ||||| |||||||| || ||||||||||||||||||||||| | |||||||    
T  34785165 gtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattct 34785115  T

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