View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457R-Insertion-3 (Length: 655)
Name: NF1457R-Insertion-3
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457R-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 7 - 653
Target Start/End: Original strand, 44273437 - 44274077
Alignment:
| Q |
7 |
cactttcttaattgaacgatgtgggacttgtaattaggtgcataatatatgactatcttaaaatttaataactacaacagtatgaagtttacaagacatg |
106 |
Q |
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| T |
44273437 |
cactttcttaattgaacgatgtgggacttgtaattaggtgcataatatatgactatcttaaaatttaataactacaacagtatgaagtttacaagacatg |
44273536 |
T |
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| Q |
107 |
gtggagaatgatcggtccattaggaacgatgcttcaagaatatactttggatatatctagttaaacataaactgcaaaatcggacttccttaatattgtg |
206 |
Q |
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| T |
44273537 |
gtggagaatgatcggtccattaggaacgatgcttcaagaatatactttggatatatctagttaaacataaactgcaaaatcggacttccttaatattgtg |
44273636 |
T |
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| Q |
207 |
tgcatatttgataacatgtaaattaggagacggatatggtccgtccatacaaagtgttgctctaattttaattggagcctttgctaatatatggtgggat |
306 |
Q |
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| T |
44273637 |
tgcatatttgataacatgtaaattaggagacggatatggtccatccatacaaagtgttgctctaattttaattggagcctttgctaatatatggtgggat |
44273736 |
T |
|
| Q |
307 |
tcatcttttaagttcataagtctttgaatcggatttctcgtgnnnnnnnnnnnnatataaaagtaaagatatacacgcatagaatgaattttcatactct |
406 |
Q |
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| T |
44273737 |
tcatcttttaagttaataagtctttgaatcggatttctcgtgtttttattttttatataaaagtaaagatatacatgcatagaatgaattttcatactct |
44273836 |
T |
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| Q |
407 |
aacctattgatagaaattccagtttcaattatttgagttttataaaaatattttgatagaaaatgagttcaatctgaacctacatacnnnnnnnnaagga |
506 |
Q |
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| T |
44273837 |
aacctattgatagaaattccagtttcaattatttgagttttataaaaatattttgataaaaaatgagttcaatctgaacttacatacttttttttaagga |
44273936 |
T |
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| Q |
507 |
gctgaacttacatacttacctttgttcnnnnnnnnnnnnngaactctcatcttttgtcttcttttattgtttaaacttctgattttgaaaggaagtaaat |
606 |
Q |
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| T |
44273937 |
gctgaacttacatacttacctttgtt-----taaaaaaaagaactctcatcttctgtcttgttttattgtttaaactttcgattttgaaaggaaataaat |
44274031 |
T |
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| Q |
607 |
catggtaggttcaatcgatcaagagataaataaaatcttgttaatta |
653 |
Q |
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| T |
44274032 |
catggta-gttcaatcgatcaagagataaataaaatctagttaatta |
44274077 |
T |
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