View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457R-Insertion-4 (Length: 605)
Name: NF1457R-Insertion-4
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457R-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 215 - 442
Target Start/End: Original strand, 43317692 - 43317919
Alignment:
| Q |
215 |
cttttcaaacaatgctgtagtttacaaactgtaattgagttctgaaataaactttcatagcacaattacttatagtctaaaaaataagtttcaaaatgtt |
314 |
Q |
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| T |
43317692 |
cttttcaaacaatgctgtagtttacaaactgtaattgagttctgaaataaactttcatagcacaattacttatagtctataaaataagtttcaaaatgtt |
43317791 |
T |
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| Q |
315 |
ctaaatacctaccaaaattgtccgagttgcttgctcagtcataagagtttacatctaatcacttccacttatcactttgtcaatgatgtttacaatattg |
414 |
Q |
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| T |
43317792 |
ctaaatacctaccaaaattgtccgagttgcttgctcagtcataagagtttatatctaatcacttccacttatcactttgtcaatgatgtttacaatattg |
43317891 |
T |
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| Q |
415 |
tcaatgtcatatttgatgttctgaaata |
442 |
Q |
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| T |
43317892 |
tcaatgtcatattcgacgttctgaaata |
43317919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 472 - 605
Target Start/End: Original strand, 43317994 - 43318127
Alignment:
| Q |
472 |
taatacttgtaaggcgtgtgagtagtatttttcatggtgttggtagcaatacttaatttgttggggtgttggtattgaattgcgtgggtgcatatagtaa |
571 |
Q |
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| T |
43317994 |
taatacttgtaaggcgtgtgagtagtatttttcatggtgttggtagcaatacttaatttgttggggtgttggtattgaattgcgtgggtgcatatagtaa |
43318093 |
T |
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| Q |
572 |
taccgaatgttcagctcgcccattcttcactgta |
605 |
Q |
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| T |
43318094 |
taccgaatgttcagctcgcgcattcttcactgta |
43318127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 43317319 - 43317396
Alignment:
| Q |
49 |
actggatttggatttttacaataaagcatggttggtggtggggatgggcatctatatatttcgagataaagaatgatg |
126 |
Q |
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| T |
43317319 |
actggatttggatttttacaataaagcatggttggtggtggggatgggcttctatgtatttcgagataaagaatgatg |
43317396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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