View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457R-Insertion-5 (Length: 558)

Name: NF1457R-Insertion-5
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457R-Insertion-5
NF1457R-Insertion-5
[»] chr5 (2 HSPs)
chr5 (9-558)||(31192435-31192983)
chr5 (123-175)||(34390078-34390130)
[»] scaffold0340 (1 HSPs)
scaffold0340 (335-425)||(16675-16764)
[»] chr4 (3 HSPs)
chr4 (366-506)||(20314372-20314510)
chr4 (339-389)||(17380764-17380814)
chr4 (339-411)||(19084149-19084220)
[»] chr6 (2 HSPs)
chr6 (215-255)||(2980671-2980710)
chr6 (339-387)||(8323174-8323222)
[»] chr8 (1 HSPs)
chr8 (334-387)||(12656527-12656580)
[»] chr2 (2 HSPs)
chr2 (339-388)||(23738108-23738157)
chr2 (339-387)||(9789136-9789184)
[»] chr1 (1 HSPs)
chr1 (216-256)||(21448760-21448799)


Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 558
Target Start/End: Complemental strand, 31192983 - 31192435
Alignment:
Q  9 ctaatgtcactttaacacttgcagaaagaacaattaaaaattcacatggagggtggaagacaaagagaagatttcattgaacactcaaaggaagattcat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31192983 ctaatgtcactttaacacttgcagaaagaacaattaaaaattcacttggagggtggaagacaaagagaagatttcattgaacactcaaaggaagattcat 31192884  T
Q  109 ttgcagcacgagtctcatttttctagaagaagggtgagcataaattccaccatcttactgaggggaaagggaaaattagaggagttttaaaacaattgcc 208  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31192883 ttgcagcacgagtctcatttttctagaagaagagcgagcataaattccaccatcttactgaggggaaagggaaaattagaggagttttaaaacaattgcc 31192784  T
Q  209 ttgtaatgggatattttgtaatgttttcatttttgagtcatgtaattcactacaaaggcatgaaaattgacaaagaaaagcatctcattaagaattgaga 308  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31192783 tcgttatgggatattttgtaatgttttcatttttgagtcatgtaattcactgcaaaggcatgaaaattgacaaagaaaagcatctcattaagaattgaga 31192684  T
Q  309 atacaataaatgaagattcgacggtatctaaagacattacagagtggagaaattatattccaagtcccatgacaagtttcaaatgaagaaagcactctaa 408  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  31192683 atacaatgaatgaagattcgagggtatctaaagacattacagagtggagaaattatattccaagtcccatgataagtttc-aatgaagaaagcactctaa 31192585  T
Q  409 aagatcaagaaaaaggcnnnnnnngattttggaagaaggtgccgtgcaacccaagcatgatcttgtgcaccctggatgtgcaaaacaatgcacaaaatgt 508  Q
    |||| ||||||||| |        |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  31192584 aagaccaagaaaaaaggcaaaaaagattttggaagaaggtgccgtgcaacccaagcatgatcttgtccaccctggatgtgcaaaacagtgcacaaaatgt 31192485  T
Q  509 actgtttttgacttgatgtgtggcgctcatgatgctacgcgcaacgtgtg 558  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  31192484 actgtttttgatttgatgtgtggcgctcatgatgccacgcgcaatgtgtg 31192435  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 34390130 - 34390078
Alignment:
Q  123 tcatttttctagaagaagggtgagcataaattccaccatcttactgaggggaa 175  Q
    ||||| ||||| |||||||| ||||||||||| || |||||||||||||||||    
T  34390130 tcattgttctataagaagggagagcataaattacaacatcttactgaggggaa 34390078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 16764 - 16675
Alignment:
Q  335 tctaaagacattacagagtggagaaattatattccaagtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaaggc 425  Q
    ||||||||||||||| || | |||||||||||||  ||||||| |||||||||| |||||||||| ||||| ||||||| |||||||||||    
T  16764 tctaaagacattacaaagagaagaaattatattctgagtcccaagacaagtttc-aatgaagaaaacactcaaaaagatgaagaaaaaggc 16675  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 506
Target Start/End: Original strand, 20314372 - 20314510
Alignment:
Q  366 ttccaagtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaaggcnnnnnnngattttggaagaaggtgccgtgcaacccaagca 465  Q
    |||||||||||| ||||| ||||||| |||||||| |||| |||||| ||||||||| ||       | | ||||||||||||||| ||||  || ||||    
T  20314372 ttccaagtcccaagacaaatttcaaa-gaagaaagtactcaaaaagaccaagaaaaaagcaaaaaatg-tgttggaagaaggtgccatgcactccgagca 20314469  T
Q  466 tgatcttgtgcaccctggatgtgcaaaacaatgcacaaaat 506  Q
    |||   ||||| |||||| ||||||||||||||||||||||    
T  20314470 tgactctgtgcgccctggttgtgcaaaacaatgcacaaaat 20314510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 17380814 - 17380764
Alignment:
Q  339 aagacattacagagtggagaaattatattccaagtcccatgacaagtttca 389  Q
    ||||||||||| || ||||||||| |||| ||||||||| |||||||||||    
T  17380814 aagacattacaaagaggagaaattctatttcaagtcccaagacaagtttca 17380764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 19084149 - 19084220
Alignment:
Q  339 aagacattacagagtggagaaattatattccaagtcccatgacaagtttcaaatgaagaaagcactctaaaag 411  Q
    ||||||||||| ||||||||| |  |||||||||| ||| |||||||||| || |||||||||| || |||||    
T  19084149 aagacattacaaagtggagaactactattccaagtgccaagacaagtttc-aaggaagaaagcattcaaaaag 19084220  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 2980671 - 2980710
Alignment:
Q  215 tgggatattttgtaatgttttcatttttgagtcatgtaatt 255  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  2980671 tgggatattttgtaatgttttc-tttttgagtcatgtaatt 2980710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 8323174 - 8323222
Alignment:
Q  339 aagacattacagagtggagaaattatattccaagtcccatgacaagttt 387  Q
    ||||||||| | |||||||||||| |||| ||||||||| |||||||||    
T  8323174 aagacattagaaagtggagaaattctatttcaagtcccaagacaagttt 8323222  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 12656527 - 12656580
Alignment:
Q  334 atctaaagacattacagagtggagaaattatattccaagtcccatgacaagttt 387  Q
    |||| ||||||||||| | |||||||||||||||||||| | || |||||||||    
T  12656527 atctgaagacattacaaaatggagaaattatattccaagccacaagacaagttt 12656580  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 23738157 - 23738108
Alignment:
Q  339 aagacattacagagtggagaaattatattccaagtcccatgacaagtttc 388  Q
    |||| |||||| |||||||||||| |||||| ||||||| ||||||||||    
T  23738157 aagatattacaaagtggagaaattctattccgagtcccaagacaagtttc 23738108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 9789136 - 9789184
Alignment:
Q  339 aagacattacagagtggagaaattatattccaagtcccatgacaagttt 387  Q
    |||||||||||   |||||||||| |||||||||||||| |||||||||    
T  9789136 aagacattacaagttggagaaattctattccaagtcccaagacaagttt 9789184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 21448760 - 21448799
Alignment:
Q  216 gggatattttgtaatgttttcatttttgagtcatgtaattc 256  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  21448760 gggacattttgtaatgttttca-ttttgagtcatgtaattc 21448799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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