View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457R-Insertion-6 (Length: 475)
Name: NF1457R-Insertion-6
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457R-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Original strand, 52806881 - 52807347
Alignment:
| Q |
9 |
ttgttggtaacctattaagagctacattgaaacaaagctcaagagctctagattgaagtggatgttgtgaagtttgatggtgaggctgatgagacttaag |
108 |
Q |
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| T |
52806881 |
ttgttggtaacctattaagagctacattgaaacaaagctcaagagccctagattgaagtggatgttgtgaagtttgatggtgaggctgatgagacttaag |
52806980 |
T |
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| Q |
109 |
acaagctcttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagtgacttgtggatgacctcgccttctagccaacacaaga |
208 |
Q |
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| T |
52806981 |
acaagcccttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagtgacttgtggatgacctcgccttctagccaacacaaga |
52807080 |
T |
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| Q |
209 |
gaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgagcgcatcacttgatatatacacaccccctatacacttc |
308 |
Q |
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| T |
52807081 |
gaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgagcgcatcacttgatatatacacaccccctatacacttc |
52807180 |
T |
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| Q |
309 |
cctctttgtctttggaagctagtttagtttagttactctcttttgtttttctatcaaagaaacgtggaactagcttaaagagtttcaatgagtaagagag |
408 |
Q |
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| T |
52807181 |
cctctttgtctttggaagctagtttagtttagttactctcttttgtttttctatcaaagaaacgtggaactagcttaaagagtttcaatgagtgagagag |
52807280 |
T |
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| Q |
409 |
aatgaaagagctctagtaaacaggctttagaaataacaataactatgcctcactgctttctttatag |
475 |
Q |
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| T |
52807281 |
aatgaaagagctctagtaaacaggctttagaaataacaataactatgcctcactgctttctttatag |
52807347 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 16611286 - 16611234
Alignment:
| Q |
20 |
ctattaagagctacattgaaacaaagctcaagagctctagattgaagtggatg |
72 |
Q |
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| T |
16611286 |
ctattaagagcaacattgaagcaaagttcaagagctctacattgaagaggatg |
16611234 |
T |
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