View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457R-Insertion-7 (Length: 467)

Name: NF1457R-Insertion-7
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457R-Insertion-7
NF1457R-Insertion-7
[»] chr3 (1 HSPs)
chr3 (9-467)||(47271371-47271829)


Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 9 - 467
Target Start/End: Original strand, 47271371 - 47271829
Alignment:
Q  9 tcaaccacacgttaccatgagtgaaatgcattagaaaacttaggtggcgccaatagaagaaattaaggaagaaatttttgtttgtgttaggcatttatca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47271371 tcaaccacacgttaccatgagtgaaatgcattagaaaacttaggtggcgccaatagaagaaattaaggaagaaatttttgtttgtgttaggcatttatca 47271470  T
Q  109 aaggtgacgtgagtgaaggctaagatgaaagatatcgatcgatggcggtttatacaatgcagataaagaatcgaacaacatgtttaagaattaagatcat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47271471 aaggtgacgtgagtgaaggctaagatgaaagatatcgatcgatggcggtttatacaatgcagataaagaatcaaacaacatgtttaagaattaagatcat 47271570  T
Q  209 tataaattctgcttttagtaatcttgtggagaaagttttttcttttaaacacaaattcttgcatgaattggtcgtaagcatgttcaacttttgagaaagc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47271571 tataaattctgcttttagtaatcttgtggagaaagttttttcttttaaacacaaattcttgcatgaattggtcgtaagcatgttcaacttttgagaaagc 47271670  T
Q  309 tatgatttgtaattgtcatttagtatgaacatgcacacggatcatcaagatgagaaccgtgtgaatttgtcccaaaaacaagggaatccgtgtctgatgt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47271671 tatgatttgtaattgtcatttagtatgaacatgcacacggatcatcaagatgagaaccgtgtgaatttgtcccaaaaacaagggaatccgtgtctgatgt 47271770  T
Q  409 taagagataacatatcaaacgttgtttgttgttctagtattttcagcttgattttcatg 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47271771 taagagataacatatcaaacgttgtttgttgttctagtattttcagcttgattttcatg 47271829  T

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