View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457R-Insertion-8 (Length: 372)
Name: NF1457R-Insertion-8
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457R-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 49922984 - 49923338
Alignment:
| Q |
9 |
attctcaacctgatattaaatcaaatcaaagtcacactatcttatactcactgaaaactacatagtttcatacatggatctgaattttctcattcccgct |
108 |
Q |
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| T |
49922984 |
attctcaacctgatgttaaatcaaatcaaagtcacactatcttatactcactgaaaactgcatagtttcacacatggatctggattttctcattcccgtt |
49923083 |
T |
|
| Q |
109 |
ctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcacttctttttg |
208 |
Q |
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| T |
49923084 |
ctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcatttctttttg |
49923183 |
T |
|
| Q |
209 |
cattttacgaatctgggtcaggttgttttactcgtggga-ttttttacttacttggccattgttggatccattctccctgaaaaacttgttcctggtgtt |
307 |
Q |
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| T |
49923184 |
cattttacgaatctgggtcaggttgttttactcgtgggatttttttacttacttggccattgttggatccattctccctggaaaacttgttcctggtgtt |
49923283 |
T |
|
| Q |
308 |
gttctctctgattctcctcgtcttcattatccatgcaatggttggttactgtctt |
362 |
Q |
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| T |
49923284 |
gttctctctgattctactcgtcttcattatcgatgcaatggttggttactgtctt |
49923338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 31 - 362
Target Start/End: Complemental strand, 26778068 - 26777737
Alignment:
| Q |
31 |
aaatcaaagtcacactatcttatactcactgaaaactacatagtttcatacatggatctgaattttctcattcccgctctaagtccatcatggaactctg |
130 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||| |||||||| ||||||||||||||| | |
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| T |
26778068 |
aaatcgaagtcacactatcttatactcactgaaaactgcatagtgtcacacatggatctggattttctcattcacgctctaattccatcatggaactccg |
26777969 |
T |
|
| Q |
131 |
ttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcacttctttttgcattttacgaatctgggtcagg |
230 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
26777968 |
ttagttcaaactactcacaacccattactttaattcaatcatttattccaattctgtcatcaatttcatatctttttgcatttttcgaatctgggtcagg |
26777869 |
T |
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| Q |
231 |
ttgttttactcgtgggattttttacttacttggccattgttggatccattctccctgaaaaacttgttcctggtgttgttctctctgattctcctcgtct |
330 |
Q |
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||| |||||| | ||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
26777868 |
ttgctttacttgcgggtttttttacttacttagccattgttggatccattctccctggaaagcttgttcctggtgttgttctctctgattctactcgtct |
26777769 |
T |
|
| Q |
331 |
tcattatccatgcaatggttggttactgtctt |
362 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |
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| T |
26777768 |
tcattatcgatgcaatggttggttactgtctt |
26777737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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