View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457R-Insertion-9 (Length: 341)
Name: NF1457R-Insertion-9
Description: NF1457R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457R-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 47719165 - 47718831
Alignment:
| Q |
7 |
cattctccataaccaaaaacacgattatcaaaatcgtaatcgataacccaac-gctataaccgtaaacccttcacaattaccatatcgaaatcgctaaaa |
105 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47719165 |
cattctccataaccaaaaacacgattatcaaa-tcgtaatcgataacccaaccgctataaccgtaaacccttcacaattaccatatcgaaatctctaaaa |
47719067 |
T |
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| Q |
106 |
ccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaatcaacggaaactt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47719066 |
ccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaatcaacggcaactt |
47718967 |
T |
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| Q |
206 |
ctccggctccgatgacggtaaaacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttcttcgccccgacaaatttggccgcattcaatcaatc |
305 |
Q |
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||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47718966 |
ctccggctcagacgacggtattacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttcttcgccccgacaaatttggccgcattcaatcaatc |
47718867 |
T |
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| Q |
306 |
ctttccgtccaagttttcggcaccattcgctccctg |
341 |
Q |
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| T |
47718866 |
ctttccgtccaagttttcggcaccattcgctccctg |
47718831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 47854918 - 47855252
Alignment:
| Q |
7 |
cattctccataaccaaaaacacgattatcaaaatcgtaatcgataacccaac-gctataaccgtaaacccttcacaattaccatatcgaaatcgctaaaa |
105 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47854918 |
cattctccataaccaaaaacacgattatcaaa-tcgtaatcgataacccaaccgctataaccgtaaacccttcacaattaccatatcgaaatctctaaaa |
47855016 |
T |
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| Q |
106 |
ccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaatcaacggaaactt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47855017 |
ccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaatcaacggcaactt |
47855116 |
T |
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| Q |
206 |
ctccggctccgatgacggtaaaacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttcttcgccccgacaaatttggccgcattcaatcaatc |
305 |
Q |
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| T |
47855117 |
ctccggctcagacgacggtattacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttcttcgccccgacaaatttggccgcattcaatcaatc |
47855216 |
T |
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| Q |
306 |
ctttccgtccaagttttcggcaccattcgctccctg |
341 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
47855217 |
ctttccgtccaagttttcggcaccattcgctccctg |
47855252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 52208309 - 52208382
Alignment:
| Q |
139 |
ccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaatcaacggaaacttctccggc |
212 |
Q |
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|||||||||| |||||||||||||| |||||||||||||| || ||||||| |||||||| |||||||||||| |
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| T |
52208309 |
ccatgtatctttacaatctcactcttcaacgacccaccggaatcatctgtgccatcaacggcaacttctccggc |
52208382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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