View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_high_12 (Length: 359)
Name: NF1457_1D_high_12
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 24 - 337
Target Start/End: Original strand, 49922984 - 49923298
Alignment:
| Q |
24 |
attctcaacctgatattaaatcaaatcaaagtcacactatcttatactcactgaaaactacatagtttcatacatggatctgaattttctcattcccgct |
123 |
Q |
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| T |
49922984 |
attctcaacctgatgttaaatcaaatcaaagtcacactatcttatactcactgaaaactgcatagtttcacacatggatctggattttctcattcccgtt |
49923083 |
T |
|
| Q |
124 |
ctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcacttctttttg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49923084 |
ctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcatttctttttg |
49923183 |
T |
|
| Q |
224 |
cattttacgaatctgggtcaggttgttttactcgtggga-ttttttacttacttggccattgttggatccattctccctgaaaaacttgttcctggtgtt |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49923184 |
cattttacgaatctgggtcaggttgttttactcgtgggatttttttacttacttggccattgttggatccattctccctggaaaacttgttcctggtgtt |
49923283 |
T |
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| Q |
323 |
gttctctctgattct |
337 |
Q |
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||||||||||||||| |
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| T |
49923284 |
gttctctctgattct |
49923298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 46 - 337
Target Start/End: Complemental strand, 26778068 - 26777777
Alignment:
| Q |
46 |
aaatcaaagtcacactatcttatactcactgaaaactacatagtttcatacatggatctgaattttctcattcccgctctaagtccatcatggaactctg |
145 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||| |||||||| ||||||||||||||| | |
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| T |
26778068 |
aaatcgaagtcacactatcttatactcactgaaaactgcatagtgtcacacatggatctggattttctcattcacgctctaattccatcatggaactccg |
26777969 |
T |
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| Q |
146 |
ttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcacttctttttgcattttacgaatctgggtcagg |
245 |
Q |
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||||| |||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
26777968 |
ttagttcaaactactcacaacccattactttaattcaatcatttattccaattctgtcatcaatttcatatctttttgcatttttcgaatctgggtcagg |
26777869 |
T |
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| Q |
246 |
ttgttttactcgtgggattttttacttacttggccattgttggatccattctccctgaaaaacttgttcctggtgttgttctctctgattct |
337 |
Q |
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||| |||||| | ||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
26777868 |
ttgctttacttgcgggtttttttacttacttagccattgttggatccattctccctggaaagcttgttcctggtgttgttctctctgattct |
26777777 |
T |
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