View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_high_13 (Length: 344)
Name: NF1457_1D_high_13
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_high_13 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 17777188 - 17776849
Alignment:
| Q |
1 |
tatgagtcacggtaaaattgtcggttggagtgtgcatagagagtgtcttgaaatgcatcaattttgcagcggttgatgacggattgatcagcaccgacac |
100 |
Q |
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| T |
17777188 |
tatgagtcacggtaaaattgtcggttggagtgtgcatagagagtgtcttgaaatgcatcaattttgcagcggttgatgacggattgatcagcgccgacac |
17777089 |
T |
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| Q |
101 |
gaagagcaactgcctggtgcttctgtgggcctgctgtgttttggaacctaatgtcctgagctataaacccatctccaacagcagctacaaaaccaaatta |
200 |
Q |
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| T |
17777088 |
gaagagcaactgcctggtgcttctgtgggcctgctgtgttttggaacctaatgtcctgagctataaacccatctccaacagcagctacaaaaccaaatta |
17776989 |
T |
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| Q |
201 |
tacatcaataaaaatcactatgtcagagaatcggaaatggtaaatacagagaaggggnnnnnnnntacataccaacagttgcacttttgaaggtggttgt |
300 |
Q |
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| T |
17776988 |
tacatcaataaaaatcactatgtc--agaatcggaaatggtaaatacagagaagggg--aaaaaatacataccaacagttgcacttttgaaggtggttgt |
17776893 |
T |
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| Q |
301 |
tccatcgatgaaatttaagctgcctgtgattattgttgcgtcca |
344 |
Q |
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| T |
17776892 |
tccatcgatgaaatttaagctgcctgtgattattgttgcatcca |
17776849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 4 - 344
Target Start/End: Complemental strand, 17807878 - 17807541
Alignment:
| Q |
4 |
gagtcacggtaaaattgtcggttggagtgtgcatagagagtgtcttgaaatgcatcaattttgcagcggttgatgacggattgatcagcaccgacacgaa |
103 |
Q |
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| T |
17807878 |
gagtcacggtaaaattgtcggttggtgtgtgcgtatagagtgtcttgaaatgcatcaattttgcaacggttaatgacagatcgatcagagccgacgcgca |
17807779 |
T |
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| Q |
104 |
gagcaactgcctggtgcttctgtgggcctgctgtgttttggaacctaatgtcctgagctataaacccatctccaacagcagctacaaaaccaaattatac |
203 |
Q |
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| T |
17807778 |
gagcaactgcctgatgcttctgtggacctgccgtgttttggaatccaatgtcctgagctataaaccaatccccaacagcagctacaaaaccaaattatat |
17807679 |
T |
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| Q |
204 |
atcaataaaaatcactatgtcagagaatcggaaatggtaaatacagagaaggggnnnnnnnntacataccaacagttgcacttttgaaggtggttgttcc |
303 |
Q |
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| T |
17807678 |
acgaatcaaaatcaatgtcatagaaaaattgaaacggtaaatactgacaagggaaaaaact---cataccaacagttgcagtttggaaggtgcctgttcc |
17807582 |
T |
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| Q |
304 |
atcgatgaaatttaagctgcctgtgattattgttgcgtcca |
344 |
Q |
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| T |
17807581 |
atcaacgtaatttaagctgcctgtgattatcgttgcatcca |
17807541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 17821782 - 17821591
Alignment:
| Q |
4 |
gagtcacggtaaaattgtcggttggagtgtgcatagagagtgtcttgaaatgcatcaattttgcagcggttgatgacggattgatcagcaccgacacgaa |
103 |
Q |
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| T |
17821782 |
gagtcacggtaaaactgccggttggagtgtgcgtaaagagtgtcttgaaaggcgtcaatgcggcaacggttgatgacagattggtcagagccgacacgga |
17821683 |
T |
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| Q |
104 |
gagcaactgcctggtgcttctgtgggcctgctgtgttttggaacctaatgtcctgagctataaacccatctccaacagcagctacaaaacca |
195 |
Q |
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| T |
17821682 |
gagccactgcctggtgctttgctgcgcctgccatattttggaaccaaatatcttgtgctataaacccatccccaaccgcagctgcaaaacca |
17821591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 17821392 - 17821316
Alignment:
| Q |
268 |
cataccaacagttgcacttttgaaggtggttgttccatcgatgaaatttaagctgcctgtgattattgttgcgtcca |
344 |
Q |
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|||||||||||||| |||||||||||| ||||| |||||||| ||||||||| | ||||||||||||||||| |||| |
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| T |
17821392 |
cataccaacagttgaacttttgaaggtcgttgtcccatcgataaaatttaagtttcctgtgattattgttgcatcca |
17821316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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