View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_high_16 (Length: 325)
Name: NF1457_1D_high_16
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_high_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 44632203 - 44632523
Alignment:
| Q |
14 |
agacagtaaaacctacaaacaaacatttccatgtaaaagaagggcttatagaaggaccactaatcccgcatataacagagggtttcacagttggaaaact |
113 |
Q |
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| T |
44632203 |
agacagtaaaacctacaaacaaacatttccatataaaagaagggcttatagaaggaccactaatcccgcatataacagagggtttcacagttggaaaact |
44632302 |
T |
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| Q |
114 |
acattattatcttattcataaactaagaagatcaactacactagagtgcagcagc---------agcagtagcagtggagggtaagtaaccacgacaata |
204 |
Q |
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| T |
44632303 |
acattattatcttattcataaactaagaagatcaactacactagagtgcagcagcagcagcagtagcagtagcagtggagggtaagtaaccacgacaata |
44632402 |
T |
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| Q |
205 |
atcaaaaccataccaaacaccattagggataaaagcattgtagtaaaatgtagcaggttggtagttatgggtatatactgtcacactctctggtttccaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44632403 |
atcaaaaccataccaaacaccattagggataaaagcattgtagtaaaaagtagcaggttggtagttatgggtatatactgtcacactctctggtttccaa |
44632502 |
T |
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| Q |
305 |
ccatcgtatccagacctgtat |
325 |
Q |
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| T |
44632503 |
ccatcgtatccggacctgtat |
44632523 |
T |
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