View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_high_20 (Length: 294)
Name: NF1457_1D_high_20
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 53603584 - 53603867
Alignment:
| Q |
3 |
aaatattaattatcaaacattgttgatcacagctttttcttatgcctatttttgctcctactttgggcgaggcaaggcttctatcgattggactcttttt |
102 |
Q |
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| T |
53603584 |
aaatattaat-atcaaacattgttgatcacagctttttcttatgcctatttttgctcctactttgggcgaggcaaggcttctatcgattggactcttttt |
53603682 |
T |
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| Q |
103 |
tcactgtgtacatgtaagcatttatccctttgtaattttataagt-nnnnnnnnnntacacatttttgtaaattctaaattagtgctatcaaattgaatg |
201 |
Q |
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| T |
53603683 |
tcactgtgtacatgtaagcatttatccttttgtaattttataagtaaaaaaaaaaatacacatttttgtaaattctaaattagtgctatcaaattgaatg |
53603782 |
T |
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| Q |
202 |
cagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgctaattacaatttacaagttcatctc |
286 |
Q |
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| T |
53603783 |
cagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgctaattacaatttacaagttcatctc |
53603867 |
T |
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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 39170622 - 39170530
Alignment:
| Q |
171 |
aaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgcta |
263 |
Q |
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||||| |||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
39170622 |
aaattataaattagtgttatcaaattgaatgtagatgttcatttacagtatagcatggtcctcttgggtatgtctttagctactctattgcta |
39170530 |
T |
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