View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1457_1D_high_22 (Length: 279)
Name: NF1457_1D_high_22
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 49602522 - 49602794
Alignment:
| Q |
1 |
acaactcaaactaagcatgcataacaagataaataacaacaaaatcaataaaaaacaaagaattgagtttacctaaaagtgcatcaagagacctcaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49602522 |
acaactcaaactaagcatgcataacaagataaataacaacaaaatcaatgaaaaacaaagaattgaatttacctaaaagtgcatcaagagacctcaaatt |
49602621 |
T |
|
| Q |
101 |
tgcaacaggattatcaccaaccaagacagaaaaagcagaaactttatcagcagcagtaccagacctctgagtagaaatcaacatcttaatatcactacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49602622 |
tgcaacaggattatcaccaaccaagacagaaaaagcagaaactttatcagcagcagtaccagacctctgagtagaaatcaacatcttaatatcactacta |
49602721 |
T |
|
| Q |
201 |
cgtcccctagttgattcataatcctgagaaaattgtgccatcaacctctcacccaattccctcttcatctcag |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49602722 |
cgtcccctagttgattcataatcctgagaaaattgtgccatcaacctctcacccaattccctcttcttctcag |
49602794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 63 - 272
Target Start/End: Complemental strand, 7226611 - 7226402
Alignment:
| Q |
63 |
ttgagtttacctaaaagtgcatcaagagacctcaaatttgcaacaggattatcaccaaccaagacagaaaaagcagaaactttatcagcagcagtaccag |
162 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7226611 |
ttgaatttacctaaaagagcatcaagagacctcaaatttgcaacaggattatcaccaaccaagacagaaaaggcagaaactttatcagcagcagtaccag |
7226512 |
T |
|
| Q |
163 |
acctctgagtagaaatcaacatcttaatatcactactacgtcccctagttgattcataatcctgagaaaattgtgccatcaacctctcacccaattccct |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
7226511 |
acctctgagtagaaatcaacatcttaatatcactactacgtcccctagtcgattcataatcctgagcaaattgtgccatcaatctctcacccaataccct |
7226412 |
T |
|
| Q |
263 |
cttcatctca |
272 |
Q |
| |
|
|||| ||||| |
|
|
| T |
7226411 |
cttcttctca |
7226402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University