View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1457_1D_high_30 (Length: 223)
Name: NF1457_1D_high_30
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 30504473 - 30504668
Alignment:
| Q |
5 |
agaggaggatggtgattcttgagatattggccaaaagtgttccagtcacggcgtttctggttttcatagcggctgcttgtggtggtagagccagaaggtg |
104 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30504473 |
agaggaggacggtgattcttgaggtactggccaaaagtgttccagtcacggcgtttctggttttcatagcggctgcttgtggtggtagagccagaaggtg |
30504572 |
T |
|
| Q |
105 |
aagagctaccaactatggcgttgctgatgttgttgttactgctgttggtagttatggtgctgttggtgaggctgcaactgttgtcagagttacatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30504573 |
aagagctaccaactatggcgttgctgatgttgttgttactgctgttggtagttatggtgctgttggtgaggctgcaactgttgtcagagttacatg |
30504668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 51438950 - 51438862
Alignment:
| Q |
5 |
agaggaggatggtgattcttgagatattggccaaaagtgttccagtcacggcgtttctggttttcatagcggctgcttgtggtggtaga |
93 |
Q |
| |
|
||||||||| ||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51438950 |
agaggaggacggtgattcttgaggtactggacaaaggtgttccagtcacggcgtttctggttttcatagcggctgcttttggtggtaga |
51438862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 38980185 - 38980105
Alignment:
| Q |
1 |
ggaaagaggaggatggtgattcttgagatattggccaaaagtgttccagtcacggcgtttctggttttcatagcggctgct |
81 |
Q |
| |
|
||||||||| ||| | ||||||||||| || || ||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38980185 |
ggaaagaggtggacgatgattcttgaggtactgaccaaaggtgttccagtcacggcgtttctggttctcatagcggctgct |
38980105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University