View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_high_5 (Length: 410)
Name: NF1457_1D_high_5
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 42982840 - 42983056
Alignment:
| Q |
12 |
tcaaaaaccagcttaacaaaaattcaaaatttacagannnnnnnnn--atagaaaactatgaaacttgaaatacctgtggcagagtcaatttcttggatt |
109 |
Q |
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| T |
42982840 |
tcaaaaaccagcttaacaaaaattcaaaatttacagatttttttttttatagaaaactatgaaacttgaaatacctgtggcagagtcaatttcttggatt |
42982939 |
T |
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| Q |
110 |
cattacttttaacaagctcatcatattgcagtttaatttttctctgcaaaacgctacttgaagaagtaaacggatacatgcaatcagactcaagcttcac |
209 |
Q |
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| T |
42982940 |
cattacttttaacaagctcatcatattgcagtttaatttttctctgcaaaacgctacttgaagaagtaaacggatacatgcaatcagattcaagcttcac |
42983039 |
T |
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| Q |
210 |
acccgaatcaaaacccg |
226 |
Q |
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| T |
42983040 |
acccgaatcaaaacccg |
42983056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 302 - 410
Target Start/End: Original strand, 42983132 - 42983240
Alignment:
| Q |
302 |
ccgatggaacttccaaaactgaatccgggtcatcgaacaaggtatcccatttagcggaatcagaggggagaacttcaaaaagaatcgattttgataaatg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42983132 |
ccgatggaacttccaaaactgaatccgggtcatcgaacaaggtatcccatttagcggaatcagaggggagaacttcaaaaagaatcgattttgataaatg |
42983231 |
T |
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| Q |
402 |
ggtcgggct |
410 |
Q |
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| T |
42983232 |
ggtcgggct |
42983240 |
T |
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