View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_high_7 (Length: 376)
Name: NF1457_1D_high_7
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 373
Target Start/End: Complemental strand, 34055267 - 34054917
Alignment:
| Q |
23 |
gatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaactg |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34055267 |
gatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggctcacttcatgcatatgctggttataccaagggtggtcaactg |
34055168 |
T |
|
| Q |
123 |
actgaggcagtttggcgccgtccctacactgttgtaccctttgatgagattgagaaagcccatcatgatgtcttcaacatgatgcttcaaatcctgggag |
222 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34055167 |
actgaggaagtttggcgccgtccctacactgttgtaccctttgatgagattgagaaagcccatcatgatgtcttcaacatgatgcttcaaatcctgggag |
34055068 |
T |
|
| Q |
223 |
atgggaggttaacagacagtaagggaagaactgttgacttcaagaacacttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggct |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34055067 |
atgggaggttaacagacagtaagggaagaactgttgacttcaagaacacttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggct |
34054968 |
T |
|
| Q |
323 |
gtcggacaacagttatagccaaatcaaaagcttggcgaccgaggagtgaag |
373 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34054967 |
gtcggacaacagttataaccaaatcaaaagcttggcgaccgaggagtgaag |
34054917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 23 - 320
Target Start/End: Original strand, 47382693 - 47382992
Alignment:
| Q |
23 |
gatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaactg |
122 |
Q |
| |
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|||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || || ||||| |||||||||| ||||||||||| || |
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| T |
47382693 |
gattcggcttgacatgagcgaatttatggaacggcacacagtctccaaactcatcggttcacctcctggatatgttggttataccgagggtggtcaattg |
47382792 |
T |
|
| Q |
123 |
actgaggcagtttggcgccgtccctacactgttgtaccctttgatgagattgagaaagcccatcatgatgtcttcaacatgatgcttcaaatcctgggag |
222 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| || |
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| T |
47382793 |
actgaggcagttcggcgccgtccctatactgttgtactctttgatgagattgagaaagcccatcctgatgtcttcaatatgatgcttcaaattctggaag |
47382892 |
T |
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| Q |
223 |
atgggaggttaacagacagtaagggaagaactgttgacttcaaga--acacttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggagg |
320 |
Q |
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|||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47382893 |
atgggaggctaacagatagtaagggaagaactgtcgacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgtgattgagaaaggagg |
47382992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 45115649 - 45115942
Alignment:
| Q |
30 |
cttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaactgactgagg |
129 |
Q |
| |
|
|||||||||||||| ||||||||| | ||| ||||||||||| || ||||||| || || ||||| |||||| ||| | |||||||| ||||||| | |
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| T |
45115649 |
cttgacatgagtgagtttatggaaaggcacactgtctccaaacttattggttcacctcctggatatgttggttacaccgaaggtggtcagttgactgaag |
45115748 |
T |
|
| Q |
130 |
cagtttggcgccgtccctacactgttgtaccctttgatgagattgagaaagcccatcatgatgtcttcaacatgatgcttcaaatcctgggagatgggag |
229 |
Q |
| |
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||||| | || ||||| ||||||||||||| |||||||||||| |||||||| |||| |||||| ||||||||||||||||| ||||| | |||||| || |
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| T |
45115749 |
cagttcgtcgtcgtccttacactgttgtactctttgatgagatcgagaaagctcatcctgatgtattcaacatgatgcttcagatccttgaagatggaag |
45115848 |
T |
|
| Q |
230 |
gttaacagacagtaagggaagaactgttgacttcaaga--acacttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggc |
321 |
Q |
| |
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|||| |||||||| || ||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
45115849 |
actaacggacagtaaaggccgaactgtggatttcaagaacacacttcttataatgacgtcaaatgttggaagcagtgtgattgagaaaggaggc |
45115942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 47817986 - 47818071
Alignment:
| Q |
221 |
agatgggaggttaacagacagtaagggaagaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtg |
304 |
Q |
| |
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|||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47817986 |
agatgggaggctaactgatagtaagggaagaactgtcgacttcaagaacacacttcttataatgacatcaaatgttggaagcagtg |
47818071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 326
Target Start/End: Original strand, 40245414 - 40245712
Alignment:
| Q |
30 |
cttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaactgactgagg |
129 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||||||||||| ||||||| || | ||||| ||||||||| ||||||||||||||||||||| |
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| T |
40245414 |
cttgacatgagtgaattcatggaaaggcacacagtctccaaactcattggttcacctccaggatatgttggttatactgagggtggtcaactgactgagg |
40245513 |
T |
|
| Q |
130 |
cagtttggcgccgtccctacactgttgtaccctttgatgagattgagaaagcccatcatgatgtcttcaacatgatgcttcaaatcctgggagatgggag |
229 |
Q |
| |
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||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40245514 |
cagttcggcgtcgtccctacacggttgtactctttgatgagattgagaaagcccatcctgatgtcttcaacatgatgcttcaaatcctggaagatgggag |
40245613 |
T |
|
| Q |
230 |
gttaacagacagtaagggaagaactgttgacttcaaga--acacttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggctgtcg |
326 |
Q |
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| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |
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| T |
40245614 |
gctaacagatagtaagggaagaactgtggacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgtgatcgagaaaggaggccgtcg |
40245712 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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