View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_high_9 (Length: 365)
Name: NF1457_1D_high_9
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_high_9 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 22 - 365
Target Start/End: Original strand, 12245 - 12588
Alignment:
| Q |
22 |
aaattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatct |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12245 |
aaattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatct |
12344 |
T |
|
| Q |
122 |
tggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagcat |
221 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12345 |
tggaatttaccaatgcactaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagcat |
12444 |
T |
|
| Q |
222 |
caaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactggtt |
321 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12445 |
caaagcctgatgacttgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactggtt |
12544 |
T |
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| Q |
322 |
agtaatatttgtaccttcatcaaaattatattcaccaacataaa |
365 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12545 |
agtaatatttgtaccttcatcaaaattatattcactaacataaa |
12588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 328
Target Start/End: Original strand, 33975301 - 33975600
Alignment:
| Q |
23 |
aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt |
122 |
Q |
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||||||||||||||||| ||| ||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
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| T |
33975301 |
aattaacctctgctcatttaccaggaaaaatgcaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaactt |
33975400 |
T |
|
| Q |
123 |
ggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagcatc |
222 |
Q |
| |
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|||||||||||| ||||||| |||||| ||||| | |||||||| |||||||||||||||||| | || ||| || | | | ||||||||| | |
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| T |
33975401 |
ggaatttaccaaagcaccaaggaaccatttgagcaaagaaaaagactgattattgacatgaataacaataaaagtg------ggctcgcggagaagcagc |
33975494 |
T |
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| Q |
223 |
aaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactggtta |
322 |
Q |
| |
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| T |
33975495 |
aaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttgctgcccgtatattgtcggtatcaactggtta |
33975594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 23 - 328
Target Start/End: Original strand, 33992214 - 33992513
Alignment:
| Q |
23 |
aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt |
122 |
Q |
| |
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||||||||||| ||||| ||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
33992214 |
aattaacctcttctcatttaccaggaaaaatgcaagtgacacagacaataacaactacaataatcacttcatcatccttcatgatattctaagagatctt |
33992313 |
T |
|
| Q |
123 |
ggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagcatc |
222 |
Q |
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|||||||||||| ||||||| ||||| ||||| | |||||||| |||||||||||||| ||| |||| | | ||| | | | ||||||||| | |
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| T |
33992314 |
ggaatttaccaaagcaccaagcaaccatttgagcaaagaaaaagactgattattgacattaataaaaatagaagtgagc------tcgcggagaagcagc |
33992407 |
T |
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| Q |
223 |
aaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactggtta |
322 |
Q |
| |
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||||| || |||| ||||||||||||||| | ||| ||||||| |||||||||||| |||||||| ||||| | |||||||| |||||||||||||| |
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| T |
33992408 |
aaagcttgttgacccgtatattgtcaaaagtaatgagattgtgtattaaacaaaatccccaacagcttgctgctcacatattgtcggtatcaactggtta |
33992507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 328
Target Start/End: Original strand, 33952695 - 33952994
Alignment:
| Q |
23 |
aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt |
122 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
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| T |
33952695 |
aattaacctctgctcatttaccaggaaaaatgcaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaactt |
33952794 |
T |
|
| Q |
123 |
ggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagcatc |
222 |
Q |
| |
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|||||||||||| || |||| |||||| ||||| | |||||||| |||||||||||||| ||| |||| ||| || | | | ||||||||| | |
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| T |
33952795 |
ggaatttaccaaagcgccaaggaaccatttgagcaaagaaaaagactgattattgacattaataaaaataaaagtg------ggctcgcggagaagcagc |
33952888 |
T |
|
| Q |
223 |
aaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactggtta |
322 |
Q |
| |
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|| || ||||||| ||||||||||||| || ||| |||||||||||||| |||| ||||||||| |||||||||||||||| |||||| ||||||| |
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| T |
33952889 |
aaggcttgatgacctgtatattgtcaaagtttatgagattgtgtgttaaacggaatcctcaacagctcactgcccgtatattgtcggtatcagctggtta |
33952988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 328
Target Start/End: Original strand, 33960001 - 33960300
Alignment:
| Q |
23 |
aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt |
122 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||| | ||| || ||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
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| T |
33960001 |
aattaacctctgctcatttaccaggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaactt |
33960100 |
T |
|
| Q |
123 |
ggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagcatc |
222 |
Q |
| |
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|||||||||||| ||||||| |||||| ||||| | |||||||| |||||||||||||| ||| |||| ||| || | | | ||||||||| | |
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| T |
33960101 |
ggaatttaccaaagcaccaaggaaccatttgagcaaagaaaaagactgattattgacattaataaaaataaaagtg------ggctcgcggagaagcagc |
33960194 |
T |
|
| Q |
223 |
aaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactggtta |
322 |
Q |
| |
|
|| || ||||||| ||||||||||||| || ||| |||||||||||||| |||| ||||||||| |||||||||||||||| |||||| ||||||| |
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| T |
33960195 |
aaggcttgatgacctgtatattgtcaaagtttatgagattgtgtgttaaacggaatcctcaacagctcactgcccgtatattgtcggtatcagctggtta |
33960294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 205
Target Start/End: Original strand, 33913545 - 33913705
Alignment:
| Q |
45 |
aggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatcttggaatttaccaatgcaccaaag |
144 |
Q |
| |
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||||||||||||||||| |||| | |||| ||||||||| ||||||||| |||||||||||||||||||||| || |||| ||| ||| || | | | |
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| T |
33913545 |
aggaaaaatgcaagtgacacagaaagttactactacaatagccacttcatattccttcatgatcttctaagagagctaggaaattatcaaaacaaccagg |
33913644 |
T |
|
| Q |
145 |
aaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtg |
205 |
Q |
| |
|
|||||||||| | |||||||| || ||||||| |||||||||| |||||| ||||| |
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|
| T |
33913645 |
aaccaattgaacaaagaaaaagacttcttattgatgcaaatgaaaacacacatgaccggtg |
33913705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 33942275 - 33942353
Alignment:
| Q |
45 |
aggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatcttgg |
124 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||||| ||| ||||||||| ||||||||||||| || ||||| ||||| |
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| T |
33942275 |
aggaaaaatgcaagtgacacagaaaattactactaca-taatcacttcatcgtccttcatgatctgctgagagagcttgg |
33942353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 328
Target Start/End: Complemental strand, 8278061 - 8277762
Alignment:
| Q |
23 |
aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt |
122 |
Q |
| |
|
||||||||||||||||| ||| | |||| || |||||| | |||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
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|
| T |
8278061 |
aattaacctctgctcatttacctgaaaaagtgaaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaactt |
8277962 |
T |
|
| Q |
123 |
ggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagcatc |
222 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||| | ||| ||| ||||||||||||| |||| |||| ||| || | | | ||||||||| | |
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| T |
8277961 |
ggaatttaccaaagcaccaaggaaccatttgagcaaagagaaaaactgattattgacaagaataaaaataaaagtg------ggctcgcggagaagcagc |
8277868 |
T |
|
| Q |
223 |
aaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactggtta |
322 |
Q |
| |
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|| | ||||||| |||||||||||||| || ||| ||| |||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| |
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| T |
8277867 |
aaggtttgatgacccgtatattgtcaaagtttatgagattttgtgttaaacaaaatcctcaacatttcgctgcccgtatattgtcggtatcaactggtta |
8277768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 2891614 - 2891492
Alignment:
| Q |
23 |
aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt |
122 |
Q |
| |
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||||| ||| ||||||| ||| || |||||||||||||| || ||||||||||||| |||| ||||||||||||| ||||| |||||||| ||| ||| |
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| T |
2891614 |
aattaccctttgctcatttaccagaaaaaatgcaagtgacacatacaattacaactataatagccacttcatcatctttcataatcttctactagagctt |
2891515 |
T |
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| Q |
123 |
ggaatttaccaatgcaccaaaga |
145 |
Q |
| |
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||||||| ||| |||||||||| |
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| T |
2891514 |
ggaatttctcaaagcaccaaaga |
2891492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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