View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_12 (Length: 361)
Name: NF1457_1D_low_12
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 23 - 361
Target Start/End: Original strand, 5686448 - 5686786
Alignment:
| Q |
23 |
accatgatgatataaacatgacaagttcattaattttagtcatatttgaattcatattctttttaattattcttgcagctaggacaacagacaacacagg |
122 |
Q |
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| T |
5686448 |
accatgatgatataaacatgacaagttcattaattttagtcatatttgaattcatattctttttaattattcttgcagctaggataacagacaacacagg |
5686547 |
T |
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| Q |
123 |
aaatccaatgactgatgaaacaggaaaccctacaacaccttttgcaatgggttcaggccacttctaccctaaaagagcatcagatccaggactcatttat |
222 |
Q |
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| T |
5686548 |
aaatccaatgactgatgaaacaggaaaccctacaacaccttttgcaatgggttcaggccacttctaccctaaaagagcatcagatccaggactcatttat |
5686647 |
T |
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| Q |
223 |
gatgcatcctacatggattaccttctttacctttgcaatcttaatttaacacaacacataaaccttacatataattgtccaaacccactacctcaaccat |
322 |
Q |
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| T |
5686648 |
gatgcatcctacatggattaccttctttacctttgtaatcttaatttaacacaacacataaaccttacatataattgtccaaacccactacctcaaccat |
5686747 |
T |
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| Q |
323 |
ttgatctcaactatccatcaatacaaatccataaactca |
361 |
Q |
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| T |
5686748 |
ttgatctcaactatccatcaatacaaatccataaactca |
5686786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 84 - 361
Target Start/End: Original strand, 5698714 - 5698991
Alignment:
| Q |
84 |
tttaattattcttgcagctaggacaacagacaacacaggaaatccaatgactgatgaaacaggaaaccctacaacaccttttgcaatgggttcaggccac |
183 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
5698714 |
tttatttattcttgcagctaaaacaacagacaacacaggaaatccaattacagatgaaacaggaaatcctgcaacaccttttgcaatgggttcaggccac |
5698813 |
T |
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| Q |
184 |
ttctaccctaaaagagcatcagatccaggactcatttatgatgcatcctacatggattaccttctttacctttgcaatcttaatttaacacaacacataa |
283 |
Q |
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| T |
5698814 |
ttctaccctaaaagagcatcagatccaggactcatttatgatgcatcctacatggattaccttctttacctttgtaatcttaatttaacacaacacataa |
5698913 |
T |
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| Q |
284 |
accttacatataattgtccaaacccactacctcaaccatttgatctcaactatccatcaatacaaatccataaactca |
361 |
Q |
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| T |
5698914 |
accttacatataattgtccaaacccactacctcaaccatttgatctcaactatccatcaatacaaatccataaactca |
5698991 |
T |
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