View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1457_1D_low_14 (Length: 348)
Name: NF1457_1D_low_14
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_14 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 23 - 348
Target Start/End: Complemental strand, 43727197 - 43726872
Alignment:
| Q |
23 |
ggctattagttggatattggccagcaaacttgtttagtcacttgagaagtcatgcaagcatggtacaatttggaggtgaaattgtgaattcacgttcaag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43727197 |
ggctattagttggatattggccagcaaacttgtttagtcacttgagaagtcatgcaagcatggtacaatttggaggtgaaattgtgaattcacgttcaag |
43727098 |
T |
|
| Q |
123 |
aggctaccacactggcacacaaatgggaagtgggcatttttcaggagaaggttttagaaaagcagcttattttagaaacttacaagtagttgattgggac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43727097 |
aggctaccacactggcacacaaatgggaagtgggcatttttcaggagaaggttttagaaaagcagcttattttagaaacttacaagtagttgattgggac |
43726998 |
T |
|
| Q |
223 |
aataacttgcttcctttatcaaatattcaccaattgactgatcattcaaattgctatgatataaaagagggaagaaataatgtttggggaacttattttt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43726997 |
aataacttgcttcctttatcaaatattcaccaattggctgatcattcaaattgctatgatgtaaaagagggaagaaataatgtttggggaacttattttt |
43726898 |
T |
|
| Q |
323 |
attatggaggtcctggaaggaatgtg |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
43726897 |
attatggaggtcctggaaggaatgtg |
43726872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 347
Target Start/End: Complemental strand, 34758244 - 34757924
Alignment:
| Q |
27 |
attagttggatattggccagcaaacttgtttagtcacttgagaagtcatgcaagcatggtacaatttggaggtgaaattgtgaattcacgttcaagaggc |
126 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| || || ||||||||| | ||||| | || |
|
|
| T |
34758244 |
attagttggatactggccagcaaacatgttcagtcacttgaggagtcatgcaagcatggtacaatttggtggagagattgtgaatgctcgttctaagggt |
34758145 |
T |
|
| Q |
127 |
taccacactggcacacaaatgggaagtgggcatttttcaggagaaggttttagaaaagcagcttattttagaaacttacaagtagttgattgggacaata |
226 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||| ||| |||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34758144 |
taccacactgacactcaaatgggaagtggccattttgcagaagaaggatttaaaaaagcagcttattttagaaacttacaagtcattgattgggacaata |
34758045 |
T |
|
| Q |
227 |
acttgcttcctttatcaaatattcaccaattgactgatcattcaaattgctatgatataaaagagggaagaaataatgtttggggaacttatttttatta |
326 |
Q |
| |
|
|||| |||||| | | |||||||| || ||| |||| ||||| | ||| ||| | || || |||| | || |||||||||||||||||||||||||| |
|
|
| T |
34758044 |
acttacttcctcttgctaatattcaacatttggctgaccattctagttgttataacattaagcagggtaataacaatgtttggggaacttatttttatta |
34757945 |
T |
|
| Q |
327 |
tggaggtcctggaaggaatgt |
347 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34757944 |
tggaggtcctggaaggaatgt |
34757924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 348
Target Start/End: Complemental strand, 14494558 - 14494472
Alignment:
| Q |
262 |
gatcattcaaattgctatgatataaaagagggaagaaataatgtttggggaacttatttttattatggaggtcctggaaggaatgtg |
348 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||| ||||||||||||||| | ||| ||||| ||||| || || ||||| |||||| |
|
|
| T |
14494558 |
gatcatccaaattgctatgatatacaaggaggaataaataatgtttgggggaattacttttactatggtggaccaggaagaaatgtg |
14494472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 14494745 - 14494704
Alignment:
| Q |
72 |
tcatgcaagcatggtacaatttggaggtgaaattgtgaattc |
113 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
14494745 |
tcatgcaagtatggtacaatttggtggagaaattgtgaattc |
14494704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University