View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_19 (Length: 320)
Name: NF1457_1D_low_19
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 386624 - 386323
Alignment:
| Q |
18 |
ctgtggagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtcggcgtacggctttc |
117 |
Q |
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| T |
386624 |
ctgtgaagtaattgtttttaaaaaagccttgtgaggattttcctcaagttcgttgtattcttgagttcctatttcaggcatgagtcggcgtacggctttc |
386525 |
T |
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| Q |
118 |
tttttaatttgaatctttgacacttttggacagataattgttgttgttgaatcttcttgagaaatcttcaaggtggaactttttccaagttttgattatt |
217 |
Q |
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| T |
386524 |
tttttaatttgaatctttgacacttttggacagataattattgttgttgaatcttcttgagaaatcttcaa-gtggaactttttacaagttttgattatt |
386426 |
T |
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| Q |
218 |
tgaatacttcgagcgaggatagtagttaccttagatgataatttgtggcttctttgatacattttgactttcaacgagataatgctctaactagaaatgt |
317 |
Q |
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| T |
386425 |
tgaatacttcgagcgaggatagtagtaaccttagatgataatttgtggcttctttgatacattttgactttcaacgagataatgctctaactagaaatgt |
386326 |
T |
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| Q |
318 |
tga |
320 |
Q |
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| T |
386325 |
tga |
386323 |
T |
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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36926533 - 36926447
Alignment:
| Q |
18 |
ctgtggagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtcg |
104 |
Q |
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| T |
36926533 |
ctgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgagtcg |
36926447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 49608273 - 49608358
Alignment:
| Q |
18 |
ctgtggagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtc |
103 |
Q |
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||||| ||||||||| || ||||||| ||||| ||||||||||||||||| |||||||||||||| | | ||||||||||||||| |
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| T |
49608273 |
ctgtgaagtaattgtcttcaaaaaaggcttgtcaggattttccacaagttgattgtattcttgagtccttttttcaggcatgagtc |
49608358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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