View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_2 (Length: 532)
Name: NF1457_1D_low_2
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 5686787 - 5687255
Alignment:
| Q |
1 |
attacaccaaaactataaagaggacagtgacaaatgttggtagtagcaagagtatttacaagtttattgctaatacaccaaaggaattcaacattttagc |
100 |
Q |
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| T |
5686787 |
attacaccaaaactataaagaggacagtgacaaatgttggtagtagcaagagtgtttacaagtttattgctaatacaccaaaggaattcaacattttagc |
5686886 |
T |
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| Q |
101 |
cactccaaatgttctgaaatttaaacatgttggacagaaaagaaattttgtcatcacagtgacagcaaataaagatcagttaccaagtaagtgtgatcct |
200 |
Q |
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| T |
5686887 |
cacttcaagtgttctgaaatttaaacatgttggacagaaaaggaattttgtcatcacagtgacagcaaatagagatcagttaccaagtaagtgtgatcct |
5686986 |
T |
|
| Q |
201 |
gagaattacttttttggatggtatatttggaccgacaaatatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattct |
300 |
Q |
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| T |
5686987 |
gataaatactattttggatggtatatttggaccgacaattatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattct |
5687086 |
T |
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| Q |
301 |
tgtactcattttcttatattgattagtttattttagtgtttgttcaaaaggacaaactattagagagagtgagagacaggatcacaataaatagataaga |
400 |
Q |
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| T |
5687087 |
tgtactcattttcttatattgattagtttattttagtgttttttcaaaaggacaaactattagagagagtgagagacaggatcacaataaatagataaga |
5687186 |
T |
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| Q |
401 |
taaa--tattcttagaaatggtaggaccagattatgttcaagatgtgaatgtaatgtcatttgagactc |
467 |
Q |
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| T |
5687187 |
taaatgtattcttggaaatggtaggaccagattgtgttcaagatgtgaatgtaatgtcatttgagactc |
5687255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 5698992 - 5699466
Alignment:
| Q |
1 |
attacaccaaaactataaagaggacagtgacaaatgttggtagtagcaagagtatttacaagtttattgctaatacaccaaaggaattcaacattttagc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5698992 |
attacaccaaaactataaagaggacagtgacaaatgttggtagtagcaagagtgtttacaagtttattgctaatacaccaaaggaattcaacattttagc |
5699091 |
T |
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| Q |
101 |
cactccaaatgttctgaaatttaaacatgttggacagaaaagaaattttgtcatcacagtgacagcaaataaagatcagttaccaagtaagtgtgatcct |
200 |
Q |
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| T |
5699092 |
cactccaaatgttctgaaatttaaacatgttggacagaaaagaaattttgtcatcacagtgacagcaaataaagatcagttaccaagtaagtgtgatcct |
5699191 |
T |
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| Q |
201 |
gagaattacttttttggatggtatatttggaccgacaaatatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattct |
300 |
Q |
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| T |
5699192 |
gagaattacttttttggatggtatatttggaccgacaaatatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattct |
5699291 |
T |
|
| Q |
301 |
tgtactcattttcttatattgattagtttattttagtgtttgtt----caaaaggacaaac----------tattagagagagtgagagacaggatcaca |
386 |
Q |
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|||||||||||||||| || |||| |||| ||||||||||| | ||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
5699292 |
tgtactcattttcttacgttaattaattta--ctagtgtttgtttgtcctaaaggacaaactattggagattatttgagagagtgagagataggatcaca |
5699389 |
T |
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| Q |
387 |
ataa----atagataagataaatattcttagaa---atggtaggaccagat--tatgttcaagatgtgaatgtaatg |
454 |
Q |
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|||| ||||||| |||||||||| |||||| ||||||||||||||| | ||||||| ||||||| |||||| |
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| T |
5699390 |
ataaatagatagataggataaatattattagaaatcatggtaggaccagataatgtgttcaatatgtgaaagtaatg |
5699466 |
T |
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