View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_20 (Length: 319)
Name: NF1457_1D_low_20
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 30666995 - 30666692
Alignment:
| Q |
16 |
gacatcacaagaggaaagggtatggttgattcagttttccaagcaccacaagatactggaactcattatgcagtcatgagttcttatgagtaccttagta |
115 |
Q |
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| T |
30666995 |
gacatcacaagaggaaagggtatggttgattcagttttccaagcaccacaagatactggaactcattatgcagtcatgagttcttatgagtaccttagta |
30666896 |
T |
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| Q |
116 |
ctggacttaaacagtgagtgacttgctacgcaatttgttaattcaaaaccaaatactcgtaatttgctcatgattttattactatggtttgtaaatgaag |
215 |
Q |
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| T |
30666895 |
ctggacttaaacagtgagtgacttgctacgcattttgttaattcaaaaccaaatactcgtaatttgctcatgattttattactatggtttgtaaatgaag |
30666796 |
T |
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| Q |
216 |
tttcttttgatctaacttgtgatgatggtgttttaggtacaactttgacaacactatggatggattttacattgctcctgcttttatggacaagcttgtt |
315 |
Q |
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| T |
30666795 |
tttcttttgatctaacctgtgatgatggtgttttaggtacaactttgacaacactatggatggattttacattgctcctgcttttatggacaagcttgtt |
30666696 |
T |
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| Q |
316 |
gttc |
319 |
Q |
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|||| |
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| T |
30666695 |
gttc |
30666692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 34437067 - 34436947
Alignment:
| Q |
16 |
gacatcacaagaggaaagggtatggttgattcagttttccaagcaccacaagatactggaactcattatgcagtcatgagttcttatgagtaccttagta |
115 |
Q |
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| T |
34437067 |
gacatcacaagagggaagggtatggttgatacagttttccaagcaccacaagattctggaactcattatgcagtcatgagttcttatgagtacattagta |
34436968 |
T |
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| Q |
116 |
ctggacttaaacagtgagtga |
136 |
Q |
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| T |
34436967 |
ctggacttagacagtaagtga |
34436947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 34436585 - 34436505
Alignment:
| Q |
237 |
atgatggtgttttaggtacaactttgacaacactatggatggattttacattgctcctgcttttatggacaagcttgttgt |
317 |
Q |
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| T |
34436585 |
atgatggtatttcaggtacaaccttgacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt |
34436505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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