View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_22 (Length: 316)
Name: NF1457_1D_low_22
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 32166229 - 32166419
Alignment:
| Q |
18 |
tcaaaattaagtgactggaatagacagttttatcttgtatgttgcggccaaaatcgtcgttgatagtgagattttggccgcaacaaaacggcattgacgg |
117 |
Q |
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| T |
32166229 |
tcaaaattaagtgactggaatagacagttttatcttgtatgttgcggccaaaatcgtcgttgatagtgagattttggccgcaacaaaacggcattgacgg |
32166328 |
T |
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| Q |
118 |
ttaccattttcttcctgttttaacactcgcgacaactgcaactcgtaacaagctgaaatggcggcaagcactaattataaccatattgatt |
208 |
Q |
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| T |
32166329 |
ttaccattttcttcctgttttaacactcgcgacaactgcaactcgtaacaagctgaaatggcggcaagcactaattataaccatattgatt |
32166419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 32166493 - 32166527
Alignment:
| Q |
282 |
cacaacattgcatccattttttgttaatccgtgat |
316 |
Q |
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| T |
32166493 |
cacaacattgcatccattttatgttaatccgtgat |
32166527 |
T |
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