View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_23 (Length: 316)
Name: NF1457_1D_low_23
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 26315386 - 26315674
Alignment:
| Q |
9 |
gaaatgaacaaaaacaaaaataaatggagtttatagataccctaaagcattggctgctttgatagcatggataattctagggtgtataggaatcctcttc |
108 |
Q |
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| T |
26315386 |
gaaaagaacaaaaacaaaaataaatggagtttatagataccctaaagcattggctgctttgatagcatggatagttctagggtgtataggaatcatcttc |
26315485 |
T |
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| Q |
109 |
aaaacttgcacaatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcctataaagnnnnnnnnnnnnnnnnnnngagggttagat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
26315486 |
aaaacttgcacaatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcctataaagcaaaaacaacaaaacaaaagagggttagtt |
26315585 |
T |
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| Q |
209 |
aatatttatgtcatataaacacaatgtag-----attatattatattatattagaatagattagagggggcaaagagatatatcatttg |
292 |
Q |
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| T |
26315586 |
aatatttatgtcatataaacacaatgtagattatattatattatattatattagaatagattagagggggcaaaaagatatatcatttg |
26315674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 40 - 177
Target Start/End: Original strand, 43110533 - 43110670
Alignment:
| Q |
40 |
tatagataccctaaagcattggctgctttgatagcatggataattctagggtgtataggaatcctcttcaaaacttgcacaatgtcttctattgtttttc |
139 |
Q |
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| T |
43110533 |
tatacataccctaaagtataggctgctttaatggaagggattattctagggtgtataggaatcctcttcaaaacttgcacaatgtcttcaatggtttttc |
43110632 |
T |
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| Q |
140 |
cattagaatgaagctccatcatcatcctatcctataaa |
177 |
Q |
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| T |
43110633 |
cattagaattaagctccatcatcatcctatcctataaa |
43110670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 5249978 - 5249925
Alignment:
| Q |
119 |
caatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcct |
172 |
Q |
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|||| ||||| || ||||| ||||| ||||||| |||||||||||||||||||| |
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| T |
5249978 |
caatctcttcaatggttttaccatttgaatgaatctccatcatcatcctatcct |
5249925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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