View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_24 (Length: 315)
Name: NF1457_1D_low_24
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_24 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 13071 - 12777
Alignment:
| Q |
20 |
atcacatataccaggaggaaatctcaccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttt |
119 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13071 |
atcacatataccagtaggaaatctcaccatatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggacgctacccttt |
12972 |
T |
|
| Q |
120 |
tcgaaagccagtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12971 |
tcgaaagccagtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtt |
12872 |
T |
|
| Q |
220 |
tcaggttgtgtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12871 |
tcaggttgtgtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatt |
12777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 44 - 314
Target Start/End: Complemental strand, 33976084 - 33975814
Alignment:
| Q |
44 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacac |
143 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||| |
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| T |
33976084 |
caccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttcaaaagccagtattgtgttacac |
33975985 |
T |
|
| Q |
144 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
243 |
Q |
| |
|
||||| || ||||||||| ||| | |||||||||||||||||||||| || ||||||||||| ||||| |||| || |||||| |||||||| | || | |
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| T |
33975984 |
atgtacagagatagttttttcaaattcttcaatgtgccgaaggaagggaccgaaattcgctctagtctgattctttccaggttctgtaaagaaccgagaa |
33975885 |
T |
|
| Q |
244 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatt |
314 |
Q |
| |
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|||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33975884 |
gctcaatgttgttcagtttagaaggatggaaaccgtagtttgtgattatcagaactcttagtttactcatt |
33975814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 33960813 - 33960519
Alignment:
| Q |
20 |
atcacatataccaggaggaaatctcaccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttt |
119 |
Q |
| |
|
|||||| ||||||| |||||| ||||| || |||||||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||| |
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|
| T |
33960813 |
atcacagataccagttggaaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttgcaaatgcatctgaaattaggatgctacccttt |
33960714 |
T |
|
| Q |
120 |
tcgaaagccagtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtt |
219 |
Q |
| |
|
|| ||||||||| |||| ||||||||||| || ||||||||| ||| | |||||||||||||||||||||| || ||||||||||| ||||| |||| || |
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| T |
33960713 |
tcaaaagccagtattgtgttacacatgtagagagatagttttttcaaattcttcaatgtgccgaaggaagggaccgaaattcgctctagtctgattcttt |
33960614 |
T |
|
| Q |
220 |
tcaggttgtgtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatt |
314 |
Q |
| |
|
|||||| |||||||| | || ||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
33960613 |
ccaggttctgtaaagaaccgagaagctcaatgttgttcagtttagaaggatggaaaccgtagtttgtgattatcagaactcttagtttactcatt |
33960519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 44 - 314
Target Start/End: Complemental strand, 33953483 - 33953213
Alignment:
| Q |
44 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacac |
143 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||| |
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|
| T |
33953483 |
caccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttcaaaagccagtattgtgttacac |
33953384 |
T |
|
| Q |
144 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
243 |
Q |
| |
|
||||| || ||||||||| ||||| ||||||||||||||||||||||||| |||| ||||| | ||| |||| || |||||| |||||||| | || | |
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| T |
33953383 |
atgtagagagatagttttttcagattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
33953284 |
T |
|
| Q |
244 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatt |
314 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
33953283 |
gctcaatgttgttcagtttagaaggatggaaatcgtagtttgtgattatcagaactcttagtttactcatt |
33953213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 44 - 314
Target Start/End: Complemental strand, 33993003 - 33992733
Alignment:
| Q |
44 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacac |
143 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||| |
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| T |
33993003 |
caccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttcaaaagccagtattgtgttacac |
33992904 |
T |
|
| Q |
144 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
243 |
Q |
| |
|
||||| || ||||||||| ||||| |||||||||||||||||||||| || |||||||||| ||||| ||| || |||||| |||||||| | || | |
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|
| T |
33992903 |
atgtagagagatagttttttcagattcttcaatgtgccgaaggaagggaccaaaattcgctctagtctgattttttccaggttctgtaaagaaccgagaa |
33992804 |
T |
|
| Q |
244 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatt |
314 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
33992803 |
gctcaaagttgttcagttcacatggatggaaactgtagtttgtgattataagaacttttagtttactcatt |
33992733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 60 - 268
Target Start/End: Complemental strand, 33914289 - 33914081
Alignment:
| Q |
60 |
taatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacacatgtaaagtgatagtt |
159 |
Q |
| |
|
||||||||| |||| ||||||| || ||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||| || |||| || |
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|
| T |
33914289 |
taatcaatgctcaaatcttctaaattaggaaacaaatctgaaattaggatgctacccttttcaaaagctagtcttgtattacacatgtagagggataatt |
33914190 |
T |
|
| Q |
160 |
ttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagtagctcaaagttattcag |
259 |
Q |
| |
|
|| | ||| |||||| |||||| ||||||||||||||||| ||||| || || |||| |||||||||| ||||||| || ||||||||| || ||||| |
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|
| T |
33914189 |
ttttgagattcttcattgtgccaaaggaaggaacagaaatccgctctagcctgattcttttcaggttggataaagagctaattagctcaaaattgttcag |
33914090 |
T |
|
| Q |
260 |
ttcagaagg |
268 |
Q |
| |
|
| ||||||| |
|
|
| T |
33914089 |
tacagaagg |
33914081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 33943012 - 33942798
Alignment:
| Q |
54 |
ttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacacatgtaaagtg |
153 |
Q |
| |
|
||||| ||||| ||| |||| ||||||| || |||||| || |||||||||| ||| |||||||| ||||| |||||||||||||||||||| || | |
|
|
| T |
33943012 |
ttgcaataatccatgctcaaatcttctaaattaggaaataagtcggaaattaggatgctgcccttttcaaaagcgagtcttgtattacacatgtagaggg |
33942913 |
T |
|
| Q |
154 |
atagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagtagctcaaagtt |
253 |
Q |
| |
|
||| |||| | ||| ||||||||||||| ||||||||||||||||| | ||| || || |||| ||| |||||| ||||||| ||||||||||| || |
|
|
| T |
33942912 |
ataattttttaagattcttcaatgtgccaaaggaaggaacagaaatcctctctagcctgattcttttaaggttggataaagagctaagtagctcaagatt |
33942813 |
T |
|
| Q |
254 |
attcagttcagaagg |
268 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33942812 |
gttcagttcagaagg |
33942798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 314
Target Start/End: Original strand, 8277342 - 8277539
Alignment:
| Q |
110 |
gctacccttttcgaaagccagtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagt |
209 |
Q |
| |
|
||||||| |||| |||| || |||||||||||||||||| | |||| |||||||||| ||||||||||| ||| ||| ||||| ||||| ||||| | | |
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|
| T |
8277342 |
gctacccatttcaaaagtcattcttgtattacacatgtagacagataattttctcagattcttcaatgtgtcgagggatggaacggaaatccgctctaat |
8277441 |
T |
|
| Q |
210 |
ctaattcgtttcaggttgtgtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttac |
309 |
Q |
| |
|
|| | || ||| ||||| |||| ||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8277442 |
ctgactctttttaggttctgtagaga-------agctcaatgttattcagtttagaaggatggaaactgtagtttgtgattatcagaacttttagtttac |
8277534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 8275944 - 8276008
Alignment:
| Q |
44 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattagga |
108 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
8275944 |
caccaaatctttgcaggaatcaatgttcaattcttcaggatttggaaatgcatctgaaattagga |
8276008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 27910976 - 27911033
Alignment:
| Q |
257 |
cagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatt |
314 |
Q |
| |
|
||||||||||||||| ||||| || ||| | ||||| |||||||||||||| |||||| |
|
|
| T |
27910976 |
cagttcagaaggatgcaaaccataatttcttattatgagaacttttagtttgctcatt |
27911033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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