View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457_1D_low_25 (Length: 304)
Name: NF1457_1D_low_25
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457_1D_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 41189392 - 41189672
Alignment:
| Q |
1 |
aaaaggggttagaacaaatgtaaagttgagtnnnnnnnngaacatatgtaaagttaaaaaagccttacaagtaaggaaatgtgtgtaatacacagatgag |
100 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41189392 |
aaaagaggttagaacaaatgtaaagttgagtaaaaaaaagaacatatgtaaagttaaaaaagccttacaagtaaggaaatgtgtgtaatacacagatgag |
41189491 |
T |
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| Q |
101 |
aaacctttgttttgtcggaatattttgggaaatatcaagtgcgcccacttgtccaaaacaagttgtatcgataccttttttatccctatcacatgatgcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41189492 |
aaacctttgttttgtcggaatattttgggaaatatcaagtgcgcccacttgtccaaaacaagttgtatcgatacc-tttttatccctatcacatgatgcc |
41189590 |
T |
|
| Q |
201 |
aagggatatagcgtacgttgtctcatactcaatttttgtgttctttacttacattttgtaaagctagtaagaatgcgggtcc |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41189591 |
aagggatatagcgtacgttgtctcatactcaatttttgtgttctttacttacattttgtaaagctagtaagaatgtgggtcc |
41189672 |
T |
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