View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457_1D_low_29 (Length: 283)

Name: NF1457_1D_low_29
Description: NF1457_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457_1D_low_29
NF1457_1D_low_29
[»] chr1 (1 HSPs)
chr1 (19-283)||(34054642-34054904)
[»] chr3 (5 HSPs)
chr3 (84-283)||(47383090-47383293)
chr3 (84-171)||(47818279-47818366)
chr3 (19-64)||(47383348-47383393)
chr3 (228-283)||(47818155-47818213)
chr3 (19-64)||(47818421-47818464)
[»] chr8 (2 HSPs)
chr8 (84-283)||(40245804-40246007)
chr8 (19-67)||(40246059-40246107)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 34054642 - 34054904
Alignment:
Q  19 catcagaatcagcatccactataacagagtcaccctctttaatctccctgtcacagagagctcaatcttagaggtctgggaccataactaggatcataac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34054642 catcagaatcagcatccactataacagagtcaccctctttaatctccctgtcacagagagctcaatcttagaggtctgggaccataactaggatcataac 34054741  T
Q  119 ctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctctcgactttcagtttctctgacacttccttcagcattatacaaactatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34054742 ctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctctcgactttcagtttctctgacacttccttcagcattatacaaactatc 34054841  T
Q  219 tacttaacatccagttatgtaagttgcctcaaaataatttcatccagcctattcaagaactctgg 283  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  34054842 tacttaacatccagttatgtaagttgcctc--gataatttcatccagcctattcaagaactctgg 34054904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 84 - 283
Target Start/End: Complemental strand, 47383293 - 47383090
Alignment:
Q  84 tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt 182  Q
    |||||||||||||| |||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||| | |  |||||||    
T  47383293 tcttagaggtctggcaccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt 47383194  T
Q  183 ttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaa---aataatttcatccagcctattcaagaact 279  Q
     ||||  |||| |||||||||||||||  | |||||| |||||| ||||||| |||||||||||| ||   ||| |||||||||||||||||||||||||    
T  47383193 ctctcgaacacctccttcagcattatatcagctatctccttaacctccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaact 47383094  T
Q  280 ctgg 283  Q
    ||||    
T  47383093 ctgg 47383090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 47818366 - 47818279
Alignment:
Q  84 tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctct 171  Q
    |||||||||||||| ||||||| |||||| ||||||||  ||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  47818366 tcttagaggtctggcaccataattaggattataaccttcatcgaccactctctccctaaatctctctgtcactgaaagctcaatctct 47818279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 47383393 - 47383348
Alignment:
Q  19 catcagaatcagcatccactataacagagtcaccctctttaatctc 64  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  47383393 catcggaatcagcatccactataacagagtcaccctctttaatctc 47383348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 47818213 - 47818155
Alignment:
Q  228 tccagttatgtaagttgcctcaaaataat---ttcatccagcctattcaagaactctgg 283  Q
    ||||||| |||||||||||| |||| |||   |||||||||||||||||||||||||||    
T  47818213 tccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaactctgg 47818155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 47818464 - 47818421
Alignment:
Q  19 catcagaatcagcatccactataacagagtcaccctctttaatctc 64  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||    
T  47818464 catcagaatcagcatccactata--agagtcgccctctttaatctc 47818421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 283
Target Start/End: Complemental strand, 40246007 - 40245804
Alignment:
Q  84 tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt 182  Q
    ||||||||| ||||  ||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||| | |  |||||||    
T  40246007 tcttagaggcctggccccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt 40245908  T
Q  183 ttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaa---aataatttcatccagcctattcaagaact 279  Q
     ||||  |||| |||||||||||||||    |||||| |||||| |||||||  || |||||||| ||   ||| |||||||| ||||||||||||||||    
T  40245907 ctctcgaacacctccttcagcattatatctgctatctccttaacctccagtttagtgagttgcctgaaaacaatcatttcatcaagcctattcaagaact 40245808  T
Q  280 ctgg 283  Q
    ||||    
T  40245807 ctgg 40245804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 40246107 - 40246059
Alignment:
Q  19 catcagaatcagcatccactataacagagtcaccctctttaatctccct 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40246107 catcagaatcagcatccactataacagagtcgccctctttaatctccct 40246059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University